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Table 3 Summary of DEGs involved in antioxidation and detoxification, heat shock proteins, and immune defense

From: Transcriptomic analysis reveals insights into deep-sea adaptations of the dominant species, Shinkaia crosnieri (Crustacea: Decapoda: Anomura), inhabiting both hydrothermal vents and cold seeps

Gene category

Unigene ID

Expression level

log2(fold change)

Padj

Annotation

HV

CS

Antioxidation and detoxification

 SOD

comp117154_c0_seq4

64.14

2.25

5.16

4.11E-10

Superoxide dismutase, Cu-Zn family [Procambarus clarkii]

 Peroxidase

comp78515_c1_seq1

42.17

0.21

8.21

8.24E-08

Peroxidase, putative [Ixodes scapularis]

comp78515_c0_seq1

42.77

0.03

11.10

1.63E-20

Peroxidase-like protein isoform X2 [Linepithema humile]

comp120735_c0_seq1

32.10

1.94

4.16

1.44E-06

peroxidase-like [Plutella xylostella]

comp117925_c0_seq1

320.26

1.31

8.10

5.87E-05

Thyroid peroxidase-like [Zootermopsis nevadensis]

 CSE

comp120565_c0_seq2

24.08

0.10

7.97

1.65E-16

Cystathionine gamma-lyase-like [Limulus polyphemus]

 DDH

comp117984_c0_seq2

114.80

26.70

2.56

1.57E-02

trans-1,2-dihydrobenzene-1,2-diol dehydrogenase-like [Fopius arisanus]

 GST

comp60860_c0_seq1

164.94

41.94

2.13

2.11E-02

Glutathione S-transferases [Macrobrachium nipponense]

comp115940_c0_seq2

1345.57

10.67

7.24

2.57E-07

Glutathione S-transferase s4 [Lissorhoptrus oryzophilus]

Heat shock proteins

 HSP

comp122999_c1_seq6

52.32

5.87

3.39

3.39E-02

Heat shock protein 21 [Macrobrachium rosenbergii]

comp123864_c1_seq1

18.28

2.65

2.90

5.42E-04

Heat shock protein 21 [Macrobrachium rosenbergii]

comp120701_c2_seq3

16.52

2.67

2.86

4.46E-02

Heat shock protein 21 [Macrobrachium rosenbergii]

comp116171_c0_seq1

27.53

4.75

2.76

4.64E-02

Heat shock protein 21 [Macrobrachium rosenbergii]

comp108920_c0_seq1

120.70

27.10

2.43

9.56E-03

Heat shock protein 27, partial [Procambarus clarkii]

comp76811_c0_seq1

36.54

2.64

3.89

9.86E-07

Heat shock protein 70 [Portunus trituberculatus]

comp108897_c0_seq1

18.70

2.44

3.12

1.97E-02

Heat shock protein 70 kDa [Xantho incisus]

Immune defense

 CTL

comp124003_c1_seq3

2124.07

5.61

8.96

4.37E-26

C-type lectin [Panulirus homarus]

comp123320_c0_seq1

201.02

0.90

8.20

9.66E-23

C-type lectin [Panulirus homarus]

comp123413_c2_seq2

2242.87

27.81

6.68

9.16E-15

C-type lectin [Panulirus homarus]

comp107558_c1_seq2

74.66

0.15

9.75

1.23E-17

putative c-type lectin [Procambarus clarkii]

comp107560_c0_seq1

0.09

94.83

−10.02

7.01E-18

C type lectin containing domain protein [ Macrobrachium nipponense]

 C1q

comp123155_c0_seq2

1576.14

3.50

9.21

9.21E-29

putative complement component 1, q subcomponent protein [Procambarus clarkii]

comp117788_c0_seq1

879.58

1.89

9.19

7.82E-13

putative complement component 1, q subcomponent protein [Procambarus clarkii]

 TFPI

comp113374_c0_seq1

210.18

0.45

9.31

2.48E-24

tissue factor pathway inhibitor 2-like [Cyprinus carpio]

comp122322_c0_seq1

665.65

1.61

9.03

8.62E-08

tissue factor pathway inhibitor isoform X4 [Struthio camelus australis]

comp123942_c0_seq1

871.37

2.52

8.82

3.18E-22

Tissue factor pathway inhibitor [Limulus polyphemus]

comp117589_c0_seq1

222.59

0.75

8.64

1.16E-23

Tissue factor pathway inhibitor [Ophiophagus hannah]

 Serine protease

comp121531_c0_seq1

382.44

0.94

9.16

4.37E-26

Serine proteinase-like protein [Macrobrachium nipponense]

comp122830_c0_seq1

10.24

0.07

7.44

3.97E-07

Serine protease 38 precursor [Nasonia vitripennis]

comp118617_c0_seq1

44.91

0.20

7.96

9.48E-20

Serine proteinase stubble-like [Tropilaelaps mercedesae]

comp115439_c0_seq1

8613.91

4331.84

7.09

2.52E-11

putative trypsin serine protease [Procambarus clarkii]

 Ig

comp118268_c0_seq1

47.40

8.50

2.74

2.63E-02

Immunoglobulin [Oryctes borbonicus]

A2M

comp101450_c1_seq1

0.00

14.07

-Inf

1.77E-02

Alpha 2-macroglobulin, partial [ Scylla paramamosain]

comp120130_c2_seq1

0.00

6.95

-Inf

8.69E-04

Alpha-2-macroglobulin [ Pacifastacus leniusculus]

  1. DEGs highlighted in bold are up-regulated in CS