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Table 3 Summary of DEGs involved in antioxidation and detoxification, heat shock proteins, and immune defense

From: Transcriptomic analysis reveals insights into deep-sea adaptations of the dominant species, Shinkaia crosnieri (Crustacea: Decapoda: Anomura), inhabiting both hydrothermal vents and cold seeps

Gene category Unigene ID Expression level log2(fold change) Padj Annotation
HV CS
Antioxidation and detoxification
 SOD comp117154_c0_seq4 64.14 2.25 5.16 4.11E-10 Superoxide dismutase, Cu-Zn family [Procambarus clarkii]
 Peroxidase comp78515_c1_seq1 42.17 0.21 8.21 8.24E-08 Peroxidase, putative [Ixodes scapularis]
comp78515_c0_seq1 42.77 0.03 11.10 1.63E-20 Peroxidase-like protein isoform X2 [Linepithema humile]
comp120735_c0_seq1 32.10 1.94 4.16 1.44E-06 peroxidase-like [Plutella xylostella]
comp117925_c0_seq1 320.26 1.31 8.10 5.87E-05 Thyroid peroxidase-like [Zootermopsis nevadensis]
 CSE comp120565_c0_seq2 24.08 0.10 7.97 1.65E-16 Cystathionine gamma-lyase-like [Limulus polyphemus]
 DDH comp117984_c0_seq2 114.80 26.70 2.56 1.57E-02 trans-1,2-dihydrobenzene-1,2-diol dehydrogenase-like [Fopius arisanus]
 GST comp60860_c0_seq1 164.94 41.94 2.13 2.11E-02 Glutathione S-transferases [Macrobrachium nipponense]
comp115940_c0_seq2 1345.57 10.67 7.24 2.57E-07 Glutathione S-transferase s4 [Lissorhoptrus oryzophilus]
Heat shock proteins
 HSP comp122999_c1_seq6 52.32 5.87 3.39 3.39E-02 Heat shock protein 21 [Macrobrachium rosenbergii]
comp123864_c1_seq1 18.28 2.65 2.90 5.42E-04 Heat shock protein 21 [Macrobrachium rosenbergii]
comp120701_c2_seq3 16.52 2.67 2.86 4.46E-02 Heat shock protein 21 [Macrobrachium rosenbergii]
comp116171_c0_seq1 27.53 4.75 2.76 4.64E-02 Heat shock protein 21 [Macrobrachium rosenbergii]
comp108920_c0_seq1 120.70 27.10 2.43 9.56E-03 Heat shock protein 27, partial [Procambarus clarkii]
comp76811_c0_seq1 36.54 2.64 3.89 9.86E-07 Heat shock protein 70 [Portunus trituberculatus]
comp108897_c0_seq1 18.70 2.44 3.12 1.97E-02 Heat shock protein 70 kDa [Xantho incisus]
Immune defense
 CTL comp124003_c1_seq3 2124.07 5.61 8.96 4.37E-26 C-type lectin [Panulirus homarus]
comp123320_c0_seq1 201.02 0.90 8.20 9.66E-23 C-type lectin [Panulirus homarus]
comp123413_c2_seq2 2242.87 27.81 6.68 9.16E-15 C-type lectin [Panulirus homarus]
comp107558_c1_seq2 74.66 0.15 9.75 1.23E-17 putative c-type lectin [Procambarus clarkii]
comp107560_c0_seq1 0.09 94.83 −10.02 7.01E-18 C type lectin containing domain protein [ Macrobrachium nipponense]
 C1q comp123155_c0_seq2 1576.14 3.50 9.21 9.21E-29 putative complement component 1, q subcomponent protein [Procambarus clarkii]
comp117788_c0_seq1 879.58 1.89 9.19 7.82E-13 putative complement component 1, q subcomponent protein [Procambarus clarkii]
 TFPI comp113374_c0_seq1 210.18 0.45 9.31 2.48E-24 tissue factor pathway inhibitor 2-like [Cyprinus carpio]
comp122322_c0_seq1 665.65 1.61 9.03 8.62E-08 tissue factor pathway inhibitor isoform X4 [Struthio camelus australis]
comp123942_c0_seq1 871.37 2.52 8.82 3.18E-22 Tissue factor pathway inhibitor [Limulus polyphemus]
comp117589_c0_seq1 222.59 0.75 8.64 1.16E-23 Tissue factor pathway inhibitor [Ophiophagus hannah]
 Serine protease comp121531_c0_seq1 382.44 0.94 9.16 4.37E-26 Serine proteinase-like protein [Macrobrachium nipponense]
comp122830_c0_seq1 10.24 0.07 7.44 3.97E-07 Serine protease 38 precursor [Nasonia vitripennis]
comp118617_c0_seq1 44.91 0.20 7.96 9.48E-20 Serine proteinase stubble-like [Tropilaelaps mercedesae]
comp115439_c0_seq1 8613.91 4331.84 7.09 2.52E-11 putative trypsin serine protease [Procambarus clarkii]
 Ig comp118268_c0_seq1 47.40 8.50 2.74 2.63E-02 Immunoglobulin [Oryctes borbonicus]
A2M comp101450_c1_seq1 0.00 14.07 -Inf 1.77E-02 Alpha 2-macroglobulin, partial [ Scylla paramamosain]
comp120130_c2_seq1 0.00 6.95 -Inf 8.69E-04 Alpha-2-macroglobulin [ Pacifastacus leniusculus]
  1. DEGs highlighted in bold are up-regulated in CS
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