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Table 3 Comparison of our study with 31 previous bovine CNV studies conducted using various platforms

From: Genome-wide detection of copy number variations in polled yak using the Illumina BovineHD BeadChip

Study Platform Breed Sample CNVR count CNVR length(percentage) Overlapping CNVR count with present study Overlapping percentage
Liu et al., 2010 [31] CGH 17 90 200 36.2 Mb (1.4%) 41 20.5%
Fadista et al., 2010 [30]* CGH 4 20 224 9.4 Mb (0.37%) 18 8.0%
Kijas et al., 2011 [45]* CGH 3 9 19 4.4 Mb (0.18%) 3 15.8%
Zhang et al., 2014 [46]* CGH 14 27 339 32.8 Mb (1.3%) 46 13.6%
Zhang et al., 2015a [47]* CGH 12 24 275 21.7 Mb (0.86%) 36 13.1%
Bickhart et al., 2016 [48] CGH 8 75 1853 87.5 Mb (3.1%) 240 13.0%
Bae et al., 2010 [29]* 50 K 1 265 359 62.7 Mb (2.5%) 66 18.4%
Hou et al., 2011 [32] 50 K 21 521 682 139.8 Mb (5.5%) 209 30.6%
Hou et al., 2012b [11]* 50 K 1 472 811 130.0 Mb (5.2%) 185 22.8%
Jiang et al., 2012 [49]* 50 K 1 2047 96 23.9 Mb (0.95%) 37 38.5%
Wang et al., 2015 [50] 50 K 1 492 334 51.3 Mb (2.0%) 80 24.0%
Gurgul et al., 2015 [51] 50 K 2 1160 106 176.6 Mb (7.0%) 51 48.1%
Hou et al., 2012a [33] BovineHD 27 674 3438 146.9 Mb (5.8%) 542 15.8%
Jiang et al., 2013 [41] BovineHD 1 96 367 42.7 Mb (1.6%) 94 25.6%
Wu et al., 2015 [52] BovineHD 1 792 263 35.5 Mb (1.4%) 53 20.2%
Zhang et al., 2015b [53] BovineHD 1 6 365 13.1 Mb (0.52%) 65 17.8%
da Silva et al., 2016a [15] BovineHD 1 1509 4097 1078.5 Mb (42.9%) 736 18.0%
da Silva et al., 2016b [18] BovineHD 1 723 2649 170.6 Mb (6.8%) 546 20.6%
Sasaki et al., 2016 [54] BovineHD 1 791 861 43.7 Mb (1.7%) 189 22.0%
Xu et al., 2016 [55] BovineHD 8 300 263 15.6 Mb (0.62%) 40 15.2%
Zhou et al., 2016a [56] BovineHD 1 2230 231 70.4 Mb (2.8%) 57 24.7%
Zhou et al., 2016b [57] BovineHD 1 1682 4562 186 Mb (7.5%) 629 13.8%
Prinsen et al., 2016 [58] BovineHD 1 1410 563 57.6 Mb (2.3%) 112 19.9%
Upadhyay et al., 2017 [34] BovineHD 38 149 923 61.1 Mb (2.4%) 224 24.3%
Yang et al., 2017 [59] BovineHD 8 167 3356 148.0 Mb (5.8%) 574 17.1%
Karimi et al., 2018 [60] BovineHD 1 90 221 36.4 Mb (1.4%) 59 26.7%
Stothard et al., 2011 [35]* Resequencing 2 2 693 3.8 Mb (0.15%) 78 11.3%
Bickhart et al., 2012 [36]* Resequencing 3 5 1032 41.1 Mb (1.6%) 128 12.4%
Ben Sassi et al., 2016 [61] Resequencing 1 10 823 45.4 Mb (1.8%) 90 10.9%
Choi et al., 2016 [62] Resequencing 2 20 901 5.5 Mb (0.22%) 137 15.2%
Gao et al., 2017 [16] Resequencing 1 8 400 6.9 Mb (0.27%) 36 9%
Present study BovineHD 1 215 1066 181.6 Mb (7.2%)
  1. Based on the bovine genome assembly UMD_3.1, considering only autosomal CNVRs
  2. *: CNVRs was mapped to the Btau_4.0 genome builds in the published paper
  3. 50 K-Illumina: BovineSNP50 BeadChip
  4. BovineHD: Illumina BovineHD BeadChip
  5. CGH: Comparative Genomic Hybridization