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Table 1 Sample sequenced using RAD-Seq and summary of RAD –seq analyses

From: Genome-wide RAD sequencing to identify a sex-specific marker in Chinese giant salamander Andrias davidianus

Sample location Reads Number of base pairs MID RAD-tag Mean Depth of RAD-tag Sequence coverage Q20 (%) Q30 (%)
Female
 adC1 Zhejiang 66,274,208 9,531,810,907 GCTAC 6,507,944 10.2 0.19 97.92 93.56
 adC2 Zhejiang 139,991,345 20,139,630,928 CCTCT 9,766,767 14.3 0.41 97.94 93.59
 adC3 Shandong 155,877,412 22,421,346,688 TAATC 10,029,072 15.54 0.44 97.93 93.58
 adC8 Shandong 93,172,870 13,367,981,397 GGCTAC 8,583,073 10.9 0.27 97.91 94.17
 Subtotal 455,315,835 65,460,769,920 34,886,856 50.94 1.31
 Subaverage 113,828,958 16,365,192,480 8,721,714 12.73 0.33
Male
 adX1 Zhejiang 127,979,232 18,418,604,178 GCTTA 9,167,503 13.9 0.37 97.97 93.7
 adX2 Zhejiang 204,881,740 29,486,474,863 TCCAC 11,078,999 18.5 0.59 97.98 93.7
 adX3 Shandong 66,176,492 9,590,086,571 CTCC 6,443,154 10.2 0.20 97.93 93.56
 adX8 Shandong 79,719,690 11,421,575,816 ACCTCT 8,038,551 9.9 0.23 97.95 94.1
 Subtotal 478,757,154 68,916,741,428 34,728,207 52.5 1.02
 Subaverage 119,689,288 17,229,185,357 8,682,051 13.13 0.26
 Total 934,072,989 134,377,511,348 69,615,063 103.44 2.33
 Average 116,759,123 16,797,188,918 8,701,882 12.93 0.29