Table 1 Sample sequenced using RAD-Seq and summary of RAD –seq analyses
Sample | location | Reads | Number of base pairs | MID | RAD-tag | Mean Depth of RAD-tag | Sequence coverage | Q20 (%) | Q30 (%) |
|---|---|---|---|---|---|---|---|---|---|
Female | |||||||||
 adC1 | Zhejiang | 66,274,208 | 9,531,810,907 | GCTAC | 6,507,944 | 10.2 | 0.19 | 97.92 | 93.56 |
 adC2 | Zhejiang | 139,991,345 | 20,139,630,928 | CCTCT | 9,766,767 | 14.3 | 0.41 | 97.94 | 93.59 |
 adC3 | Shandong | 155,877,412 | 22,421,346,688 | TAATC | 10,029,072 | 15.54 | 0.44 | 97.93 | 93.58 |
 adC8 | Shandong | 93,172,870 | 13,367,981,397 | GGCTAC | 8,583,073 | 10.9 | 0.27 | 97.91 | 94.17 |
 Subtotal | – | 455,315,835 | 65,460,769,920 | – | 34,886,856 | 50.94 | 1.31 | – | – |
 Subaverage | – | 113,828,958 | 16,365,192,480 | – | 8,721,714 | 12.73 | 0.33 | – | – |
Male | |||||||||
 adX1 | Zhejiang | 127,979,232 | 18,418,604,178 | GCTTA | 9,167,503 | 13.9 | 0.37 | 97.97 | 93.7 |
 adX2 | Zhejiang | 204,881,740 | 29,486,474,863 | TCCAC | 11,078,999 | 18.5 | 0.59 | 97.98 | 93.7 |
 adX3 | Shandong | 66,176,492 | 9,590,086,571 | CTCC | 6,443,154 | 10.2 | 0.20 | 97.93 | 93.56 |
 adX8 | Shandong | 79,719,690 | 11,421,575,816 | ACCTCT | 8,038,551 | 9.9 | 0.23 | 97.95 | 94.1 |
 Subtotal | – | 478,757,154 | 68,916,741,428 | – | 34,728,207 | 52.5 | 1.02 | – | – |
 Subaverage | – | 119,689,288 | 17,229,185,357 | – | 8,682,051 | 13.13 | 0.26 | – | – |
 Total | – | 934,072,989 | 134,377,511,348 | – | 69,615,063 | 103.44 | 2.33 | – | – |
 Average | – | 116,759,123 | 16,797,188,918 | – | 8,701,882 | 12.93 | 0.29 | – | – |