Udder quarter treatment | Animal No. | Sample treatmenta | RIN value | Reads (total number) | Reads after quality trimming (%) | Mapped reads (%) |
---|---|---|---|---|---|---|
Non-challenged | Cow1 | 0 | 7.7 | 77,920,096 | 90 | 98 |
A | 4.9 | 70,975,008 | 77 | 97 | ||
B | 4.6 | 81,396,012 | 91 | 98 | ||
Cow2 | 0 | 7.8 | 78,859,264 | 90 | 98 | |
A | 4.9 | 80,349,800 | 90 | 98 | ||
B | 5.4 | 78,824,666 | 89 | 98 | ||
Cow3 | 0 | 8.1 | 80,203,836 | 90 | 99 | |
A | 5.1 | 62,510,886 | 89 | 98 | ||
B | 5.6 | 74,101,514 | 89 | 98 | ||
Challenged | Cow1 | 0 | 7.9 | 78,564,210 | 90 | 98 |
A | 4.7 | 78,719,102 | 90 | 98 | ||
B | 4.9 | 80,990,200 | 89 | 98 | ||
Cow2 | 0 | 9.6 | 92,966,426 | 89 | 98 | |
A | 5.9 | 63,610,608 | 88 | 95 | ||
B | 6.9 | 70,529,798 | 89 | 97 | ||
Cow3 | 0 | 7.8 | 85,090282 | 89 | 98 | |
A | 6.0 | 81,278,402 | 89 | 98 | ||
B | 5.7 | 88,169,812 | 89 | 98 |