Table 3 General chromosomal features and plasmid content among L. brevis strains
From: Comparative genome analysis of the Lactobacillus brevis species
L. brevis strain | Chromosome length (Mbp) | CDS | tRNA features | rRNA features | Hypothetical proteins % | Assigned function % | IS elements/ transposases | Prophage | CRISPR | GC % | Plasmids (Ranging size Kb) |
|---|---|---|---|---|---|---|---|---|---|---|---|
100D8 | 2.35 | 2228 | 66 | 15 | 21.2 | 78.8 | 25 | 1 Ina 3 Pab | – | 46.1 | 3 (39.9–45.1) |
ATCC 367 | 2.29 | 2133 | 65 | 15 | 20.8 | 79.2 | 34 | 1 In | – | 46.2 | 2 (13.4–35.6) |
BDGP6 | 2.79 | 2674 | 71 | 15 | 23.1 | 76.9 | 24 | 4 In 3 Pa | 1 | 46.6 | – |
KB290 | 2.40 | 2308 | 64 | 15 | 21.4 | 78.6 | 50 | 2 In 2 Pa | – | 46.1 | 9 (5.9–42.4) |
NCTC13768 | 2.49 | 2413 | 65 | 15 | 15.0 | 85.0 | 3 | 1 Pa | – | 46.0 | – |
NPS-QW-145 | 2.55 | 2406 | 62 | 13 | 21.5 | 78.5 | 5 | 3 Pa | 1 | 45.8 | – |
SA-C12 | 2.44 | 2344 | 66 | 15 | 23.2 | 76.7 | 42 | 2 In 3 Pa | – | 45.9 | 2 (24.8–43.6) |
SRCM101106 | 2.44 | 2379 | 67 | 15 | 23.0 | 77.0 | 46 | 3 In 4 Pa | 1 | 45.9 | 4 (16.0–36.2) |
SRCM101174 | 2.41 | 2353 | 68 | 15 | 24.0 | 76.0 | 37 | 3 In 2 Pa | – | 46.1 | 5 (9.4–50.4) |
TMW 1.2108 | 2.57 | 2448 | 66 | 15 | 22.8 | 77.2 | 17 | 2 In | – | 45.8 | 8 (5.1–107.0) |
TMW 1.2111 | 2.57 | 2458 | 66 | 15 | 21.8 | 78.2 | 22 | 2 In | – | 45.8 | 6 (8.2–107.0) |
TMW 1.2112 | 2.49 | 2283 | 65 | 15 | 19.6 | 80.4 | 29 | 1 In 1 Pa | 1 | 46.0 | 5 (8.5–59.7) |
TMW 1.2113 | 2.54 | 2376 | 69 | 15 | 22.5 | 77.5 | 30 | 2 In | 1 | 45.9 | 4 (8.5–46.6) |
UCCLB521 | 2.27 | 2088 | 62 | 15 | 20.0 | 80.0 | 32 | 2 Pa | – | 46.3 | 5 (11.3–43.8) |
UCCLB556 | 2.38 | 2201 | 66 | 18 | 22.8 | 77.2 | 32 | 1 Pa | – | 46.1 | 7 (4.3–68.4) |
UCCLB95 | 2.51 | 2283 | 65 | 15 | 22.7 | 77.3 | 132 | 1 In 1 Pa | – | 45.9 | 2 (3.5–14.0) |
UCCLBBS124 | 2.61 | 2442 | 66 | 15 | 21.8 | 78.2 | 60 | 1 In 2 Pa | – | 45.8 | 4 (21.0–49.6) |
UCCLBBS449 | 2.58 | 2404 | 66 | 15 | 21.1 | 78.9 | 114 | 1 In 3 Pa | – | 45.8 | 9 (2.8–66.8) |
ZLB004 | 2.66 | 2207 | 64 | 15 | 24.0 | 76.0 | 29 | 1 In | 2 | 46.0 | 5 (16.7–78.1) |
Average | 2.49 | 2338 | 66 | 15 | 21.7 | 78.3 | 40 | 1.4 In 1.6 Pa | – | 46.0 | 5 |