Skip to main content

Table 2 Chromosomal location (CM3.51 genome coordinates indicating euchromatine (EU) or heterochromatine (HET) regions) of haplotypes fixed either in cantaloups or inodorus groups compared with the rest of germplasm groups The letters A, B, C indicates different haplotypes. A > B indicates that first haplotype is nearly fixed. A + B indicates that both haplotypes are present (not necesarily at the similar frequency)

From: Re-evaluation of the role of Indian germplasm as center of melon diversification based on genotyping-by-sequencing analysis

Genomic position Haplotypes
chromosome scaffold start end HET/EU size INODURUS CANTA CONOMON Indian Group
1 CM3.5.1_scaffold00017 19,507,561 19,515,103 HET 7542 A A + B B B + other no A Inodorus
1 CM3.5.1_scaffold00026 30,564,508 30,569,227 EU 4719 A A B A + B melo
3 CM3.5.1_scaffold00014 25,454,999 25,616,076 EU 161,077 A > B A B A + B Canta
4 CM3.5.1_scaffold01596 2,674,636 2,677,147 EU 2511 A A B A + B melo
4 CM3.5.1_scaffold01596 3,112,230 3,162,514 EU 50,284 A > B A > B B A + B melo
5 CM3.5.1_scaffold00022 2,797,288 2,825,686 EU 28,398 A + B B > A B B > A others melo
5 CM3.5.1_scaffold00003 26,134,651 26,181,558 EU 46,907 A A B A + B melo
6 CM3.5.1_scaffold00078 29,170,126 29,280,943 HET 110,817 A A B Recombinant melo
6 CM3.5.1_scaffold00021 31,589,587 31,627,509 EU 37,922 A > B A > B B No A No B melo
7 CM3.5.1_scaffold00035 15,470,961 15,599,403 HET 445,734 A A B A > B melo
9 CM3.5.1_scaffold00051 1,143,401 1,167,001 EU 23,600 A A B A + B melo
9 CM3.5.1_scaffold00005 16,258,884 16,885,818 EU 626,934 A A + B C A + B + C Inodorus
10 CM3.5.1_scaffold00016 68,527 94,131 EU 25,604 A + B A A A + B Canta
10 CM3.5.1_scaffold00016 3,870,253 3,946,988 EU 76,735 A + B A B A + B Canta
11 CM3.5.1_scaffold00047 28,501,830 28,830,113 EU 878,141 A + B A C A + C Canta
11 CM3.5.1_scaffold00052 29,283,061 29,379,971 EU 96,910 A + C A B A + C Canta
11 CM3.5.1_scaffold00052 30,012,076 30,219,034 EU 206,958 A A B A + B melo
12 CM3.5.1_scaffold00001 24,407,798 24,426,009 EU 18,211 A A > B B A + B Inodorus