Table 2 Chromosomal location (CM3.51 genome coordinates indicating euchromatine (EU) or heterochromatine (HET) regions) of haplotypes fixed either in cantaloups or inodorus groups compared with the rest of germplasm groups The letters A, B, C indicates different haplotypes. A > B indicates that first haplotype is nearly fixed. A + B indicates that both haplotypes are present (not necesarily at the similar frequency)
Genomic position | Haplotypes | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|
chromosome | scaffold | start | end | HET/EU | size | INODURUS | CANTA | CONOMON | Indian | Group |
1 | CM3.5.1_scaffold00017 | 19,507,561 | 19,515,103 | HET | 7542 | A | A + B | B | B + other no A | Inodorus |
1 | CM3.5.1_scaffold00026 | 30,564,508 | 30,569,227 | EU | 4719 | A | A | B | A + B | melo |
3 | CM3.5.1_scaffold00014 | 25,454,999 | 25,616,076 | EU | 161,077 | A > B | A | B | A + B | Canta |
4 | CM3.5.1_scaffold01596 | 2,674,636 | 2,677,147 | EU | 2511 | A | A | B | A + B | melo |
4 | CM3.5.1_scaffold01596 | 3,112,230 | 3,162,514 | EU | 50,284 | A > B | A > B | B | A + B | melo |
5 | CM3.5.1_scaffold00022 | 2,797,288 | 2,825,686 | EU | 28,398 | A + B | B > A | B | B > A others | melo |
5 | CM3.5.1_scaffold00003 | 26,134,651 | 26,181,558 | EU | 46,907 | A | A | B | A + B | melo |
6 | CM3.5.1_scaffold00078 | 29,170,126 | 29,280,943 | HET | 110,817 | A | A | B | Recombinant | melo |
6 | CM3.5.1_scaffold00021 | 31,589,587 | 31,627,509 | EU | 37,922 | A > B | A > B | B | No A No B | melo |
7 | CM3.5.1_scaffold00035 | 15,470,961 | 15,599,403 | HET | 445,734 | A | A | B | A > B | melo |
9 | CM3.5.1_scaffold00051 | 1,143,401 | 1,167,001 | EU | 23,600 | A | A | B | A + B | melo |
9 | CM3.5.1_scaffold00005 | 16,258,884 | 16,885,818 | EU | 626,934 | A | A + B | C | A + B + C | Inodorus |
10 | CM3.5.1_scaffold00016 | 68,527 | 94,131 | EU | 25,604 | A + B | A | A | A + B | Canta |
10 | CM3.5.1_scaffold00016 | 3,870,253 | 3,946,988 | EU | 76,735 | A + B | A | B | A + B | Canta |
11 | CM3.5.1_scaffold00047 | 28,501,830 | 28,830,113 | EU | 878,141 | A + B | A | C | A + C | Canta |
11 | CM3.5.1_scaffold00052 | 29,283,061 | 29,379,971 | EU | 96,910 | A + C | A | B | A + C | Canta |
11 | CM3.5.1_scaffold00052 | 30,012,076 | 30,219,034 | EU | 206,958 | A | A | B | A + B | melo |
12 | CM3.5.1_scaffold00001 | 24,407,798 | 24,426,009 | EU | 18,211 | A | A > B | B | A + B | Inodorus |