Fig. 6

Hypergraph of the yeast cell cycle dataset with supervised grouping. a The plot of the entire network; b Detailed plot of the top 15 most connected vertices; c Sub-hypergraph centered at the module Single organism membrane budding; d Gene level hypergraph for the module triplet “single-organism membrane budding”, “G2M transition of mitotic cell cycle”, and “pyruvate metabolism”. For the module-level hypergraph, vertex sizes reflect the degree of connections, with more connected more red and less connected more yellow. Vertex sizes reflect the module sizes. The width of each edge is the rescaled edge weight. Three types of hypergraph edges are presented: type 1 edge connects only one vertex; type 2 edge connects two different vertices; and type 3 edge connects three different vertices. For the gene-level hypergraph, vertex sizes reflect the degree, with more connected nodes larger