Table 1 Genomic features of Cryptosporidium chipmunk genotype I in comparison with some other Cryptosporidium spp
| Â | Cryptosporidium chipmunk genotype I | C. parvum | C. hominis UdeA01 | C. meleagridis | C. ubiquitum | C. baileyi | C. andersoni | C. muris |
|---|---|---|---|---|---|---|---|---|
Total length (Mb) | 9.05 | 9.1 | 9.06 | 8.97 | 8.97 | 8.5 | 9.09 | 9.21 |
No. of super contigs | 50 | 8 | 97 | 57 | 27 | 153 | 135 | 45 |
GC content (%) | 32 | 30.3 | 30.1 | 31 | 30.8 | 24.3 | 28.5 | 28.4 |
Nucleotide sequence identity (%) | – | 82.25 | 82.48 | 81.22 | 78.65 | 46.08 | 26.44 | 26.89 |
Number of genes | 3783 | 3805 | 3819 | 3782 | 3767 | 3728 | 3905 | 3937 |
Total length of CDS (Mb) | 6.94 | 6.83 | 6.81 | 6.91 | 6.94 | 6.69 | 6.86 | 6.93 |
GC content in CDS (%) | 33.6 | 31.9 | 31.8 | 32.4 | 33 | 25.6 | 30.1 | 30 |
Amino acid sequence identity (%) | – | 83.49 | 83.99 | 81.68 | 79.04 | 58.89 | 47.03 | 47.22 |
GC content at 3rd position in codons (%) | 26.9 | 22.5 | 23.5 | 24.1 | 24.5 | 12.6 | 18.1 | 17.8 |
Gene density (gene/Mb) | 418 | 418.1 | 421.5 | 421.6 | 420 | 438.6 | 429.6 | 427.5 |
Percent coding (%) | 76.7 | 75 | 75.2 | 77 | 77.4 | 78.7 | 75.5 | 75.2 |
No. of genes with intron | 515 | 163 | 417 | 506 | 758 | 763 | 832 | 798 |
Genes with intron (%) | 13.6 | 4.2 | 10.9 | 13.4 | 20.1 | 20.5 | 21.3 | 20.3 |
No. of tRNA | 45 | 45 | 45 | 45 | 45 | 46 | 44 | 45 |
No. of tRNAmet | 2 | 2 | 2 | 2 | 2 | 2 | 2 | 2 |
Proteins with signal peptide | 396 | 397 | 391 | 397 | 399 | 344 | 309 | 323 |
Proteins with transmembrane domain | 793 | 832 | 817 | 805 | 772 | 813 | 839 | 836 |
Proteins with GPI anchor | 57 | 63 | 54 | 55 | 50 | 57 | 47 | 52 |