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Table 2 Summary statistics of S. argus transcriptome. *FPKM: fragments per kilobase per transcript per million mapped reads

From: Transcriptional analysis of renal dopamine-mediated Na+ homeostasis response to environmental salinity stress in Scatophagus argus

Sequencing Number
Before trimming
 Raw reads (pair-end) 1,023,047,770
After trimming
 Clean reads (pair-end) 575,312,926
 Total nucleotide (bp) 7.22 × 1010
After assembly
  De Novo assembled Filtered (FPKM* ≥ 1)
 Transcripts 186,397 43,933
 N50 length (bp) 2521 3118
 N90 length (bp) 462 978
 Reads Mapped 1.94 × 108 1.26 × 108
 GC content (%) 43.20 45.02
 Min length (bp) 224
 Max length (bp) 23,112
 Average length (bp) 1272 2022
Annotation
 NCBI-NR 14,259
 SWISS-PROT 8360
 GO 12,247
 KEGG 11,354
 KOG 3168
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BMC Genomics

ISSN: 1471-2164

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