Sequencing | Number | |
---|---|---|
Before trimming | ||
Raw reads (pair-end) | 1,023,047,770 | |
After trimming | ||
Clean reads (pair-end) | 575,312,926 | |
Total nucleotide (bp) | 7.22 × 1010 | |
After assembly | ||
De Novo assembled | Filtered (FPKM* ≥ 1) | |
Transcripts | 186,397 | 43,933 |
N50 length (bp) | 2521 | 3118 |
N90 length (bp) | 462 | 978 |
Reads Mapped | 1.94 × 108 | 1.26 × 108 |
GC content (%) | 43.20 | 45.02 |
Min length (bp) | 224 | |
Max length (bp) | 23,112 | |
Average length (bp) | 1272 | 2022 |
Annotation | ||
NCBI-NR | 14,259 | |
SWISS-PROT | 8360 | |
GO | 12,247 | |
KEGG | 11,354 | |
KOG | 3168 |