Table 2 Summary statistics of S. argus transcriptome. *FPKM: fragments per kilobase per transcript per million mapped reads
Sequencing | Number | |
|---|---|---|
Before trimming | ||
 Raw reads (pair-end) | 1,023,047,770 | |
After trimming | ||
 Clean reads (pair-end) | 575,312,926 | |
 Total nucleotide (bp) | 7.22 × 1010 | |
After assembly | ||
|  | De Novo assembled | Filtered (FPKM* ≥ 1) |
 Transcripts | 186,397 | 43,933 |
 N50 length (bp) | 2521 | 3118 |
 N90 length (bp) | 462 | 978 |
 Reads Mapped | 1.94 × 108 | 1.26 × 108 |
 GC content (%) | 43.20 | 45.02 |
 Min length (bp) | 224 | |
 Max length (bp) | 23,112 | |
 Average length (bp) | 1272 | 2022 |
Annotation | ||
 NCBI-NR | 14,259 | |
 SWISS-PROT | 8360 | |
 GO | 12,247 | |
 KEGG | 11,354 | |
 KOG | 3168 | |