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Table 2 Summary statistics of S. argus transcriptome. *FPKM: fragments per kilobase per transcript per million mapped reads
| Sequencing | Number | |
|---|---|---|
| Before trimming | ||
| Raw reads (pair-end) | 1,023,047,770 | |
| After trimming | ||
| Clean reads (pair-end) | 575,312,926 | |
| Total nucleotide (bp) | 7.22 × 1010 | |
| After assembly | ||
| De Novo assembled | Filtered (FPKM* ≥ 1) | |
| Transcripts | 186,397 | 43,933 |
| N50 length (bp) | 2521 | 3118 |
| N90 length (bp) | 462 | 978 |
| Reads Mapped | 1.94 × 108 | 1.26 × 108 |
| GC content (%) | 43.20 | 45.02 |
| Min length (bp) | 224 | |
| Max length (bp) | 23,112 | |
| Average length (bp) | 1272 | 2022 |
| Annotation | ||
| NCBI-NR | 14,259 | |
| SWISS-PROT | 8360 | |
| GO | 12,247 | |
| KEGG | 11,354 | |
| KOG | 3168 | |
