Table 5 Gene content validation: We searched for species-specific fused gag/pol in the interior of the known and the predicted LTR-RTs
From: LtrDetector: A tool-suite for detecting long terminal repeat retrotransposons de-novo
| Â | A. thaliana | O. sativa | G. max | S. bicolor |
|---|---|---|---|---|
Ground truth | 0.65 | 0.43 | 0.51 | 0.10 |
LtrDetector | 0.48 | 0.31 | 0.25 | 0.10 |
LTR_Finder | 0.49 | 0.28 | 0.20 | 0.11 |
LTRharvest | 0.35 | 0.21 | 0.18 | 0.09 |