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Table 4 Primers used for qRT-PCR validation of Pfu. mantle edge tissues transcriptome data

From: Comparative transcriptomic and proteomic analysis of yellow shell and black shell pearl oysters, Pinctada fucata martensii

Primer name

Gene name

Sequences (5′-3′)

18S-F

18S

CGTTTCAACAAGACGCCAGTAG

18S-R

ACGAAAAAAAGGTTTGAGAGACG

c50039-RT-F

Nacre protein

TTCATCGCTACCATTACAACGG

c50039-RT-R

TCGTCGGAAGATTACAGCATTC

c62280-RT-F

Nacre protein, N16.3

TCTGTAGATACGCTTGGTCTCC

c62280-RT-R

TTCCGTTACCGTTGTCATCATC

c70362-RT-F

Nacre protein

CTTGGACAGGCACAGACTCA

c70362-RT-R

CTGAATGGTGTTCTTCGGCAAT

c68187-RT-F

Shell matrix protein

CCAGTGCTTCCAATACCAAGG

c68187-RT-R

TCCAGTGCGGTTGTATGTGTA

c61883-RT-F

Shell protein 1

ATTCAGTTCCGTACCTGTTCCT

c61883-RT-R

ACATTGTTGGCGTCTAGTCTCT

c56018-RT-F

Shell protein 12

TAGGAGGAGCACAGCACTTG

c56018-RT-R

ACGAGGTTGACTGTAGGTGTTA

c55873-RT-F

Mantle gene 12

CGTTCATAGACTGCCAACATG

c55873-RT-R

TAAGACTGACGCCGACTGT

c77975-RT-F

Mantle gene 4

TCCGAGAGGTAATGTTGTCTAC

c77975-RT-R

CCGTTGTACTCAGTGGAAGAA

c45445-RT-F

Mantle gene 6

CCTTTACGCATTGGTTGATACG

c45445-RT-R

TGAAGAGTTGGCTGAAGTGTTC

c59543-RT-F

Mantle gene 1

AAGGATGGTGGAGAAGGACAA

c59543-RT-R

TCGTAAGAAGCTAGTTCACAGG

c72378-RT-F

Calmodulin (CaM)

ATTGGGACAGAACCCAACAG

c72378-RT-R

GCTTCCCGGATTTCTTCTTC

c50108-RT-F

Calmodulin (CaM)

CGAGAAGCTTTCCGAGTGTT

c50108-RT-R

TCCGTCCCCATCTAAATCAG

c66278-RT-F

Calmodulin (CaM)

GAGACCGTCGGCATCAGTAT

c66278-RT-R

TGAAGAAGTATCAGCGGAGGAT

c64073-RT-F

astacin

ATCACCGCCATCTGTTCCT

c64073-RT-R

TCCGCTTCTACTACTTCCTGTA

c73606-RT-F

tyr-3

TGGTCAGGTCTGTAGGTTGTG

c73606-RT-R

TGGATGTTCTTCGGTGATGGT

c51674-RT-R

TCCTCGGATCTTGTCTGACTTC

c76659-RT-F

Sulfur quinone oxidoreductase

CGACTACGACGCTAATCCTCT

c76659-RT-R

ATGATGTTGCCTTCACTCTTCC

c75964-RT-F

CYP3A

GCACGGTCCAACCTTAATACTG

c75964-RT-R

AGGCGACAAGAGATTCAAGAAC

c66049-RT-F

CRBP

GATGAAGTCACGGCAGATGG

c66049-RT-R

CTAGTGATGACCGATTCAGGAT

  1. tyr-3, tyrosinase-like protein 3; CYP3A, cytochrome P450 3A; CRBP, cellular retinol binding protein