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Table 4 Genes annotated commonly between selection signatures of two or more datasets

From: Identification of selection signatures involved in performance traits in a paternal broiler line

Gene ID Gene name Description
F ST SNP and INDEL windows (≥0.3) datasets
 ENSGALG00000000242 EBF2 early B cell factor 2
 ENSGALG00000002370 SH2D4B SH2 domain containing 4B
 ENSGALG00000002414 TSPAN14 tetraspanin 14
 ENSGALG00000004045 AGAP1 ArfGAP with GTPase domain, ankyrin repeat and PH domain 1
 ENSGALG00000004116 TRPM8 transient receptor potential cation channel subfamily M member 8
 ENSGALG00000004129 SPP2 secreted phosphoprotein 2
 ENSGALG00000007555 CCND1 cyclin D1
 ENSGALG00000007556 LTO1 LTO1, ABCE1 maturation factor
 ENSGALG00000012542 RASD2 RASD family member 2
 ENSGALG00000015402 C3orf38 chromosome 3 open reading frame 38
 ENSGALG00000015403 EPHA3 EPH receptor A3
 ENSGALG00000015570 GPR63 G protein-coupled receptor 63
 ENSGALG00000015573 FHL5 four and a half LIM domains 5
 ENSGALG00000016518 PHKA2 phosphorylase kinase regulatory subunit alpha 2
 ENSGALG00000016522 PPEF1 protein phosphatase with EF-hand domain 1
 ENSGALG00000016529 CDKL5 cyclin dependent kinase like 5
 ENSGALG00000016541 novel gene BEN domain containing 2
 ENSGALG00000016543 NHS NHS actin remodeling regulator
 ENSGALG00000022866 ZNF654 zinc finger protein 654
 ENSGALG00000026372 novel gene --
 ENSGALG00000028376 FGF19 fibroblast growth factor 19
 ENSGALG00000032974 ADAMTS2 ADAM metallopeptidase with thrombospondin type 1 motif 2
 ENSGALG00000033076 novel gene --
 ENSGALG00000035116 STAG1 stromal antigen 1
 ENSGALG00000035393 LRRC14B leucine rich repeat containing 14B
 ENSGALG00000035906 YTHDC1 YTH domain containing 1
 ENSGALG00000036204 novel gene --
 ENSGALG00000036327 NGEF neuronal guanine nucleotide exchange
 ENSGALG00000036730 MRPS35 mitochondrial ribosomal protein S35
 ENSGALG00000036938 RALYL RALY RNA binding protein like
 ENSGALG00000038154 YAP1 Yes associated protein 1
 ENSGALG00000038730 GIGYF2 GRB10 interacting GYF protein 2
 ENSGALG00000039139 TNS3 tensin 3
 ENSGALG00000039690 STMN2 stathmin 2
 ENSGALG00000039738 SLC9A3 solute carrier family 9 member A3
 ENSGALG00000040264 C9H2ORF82 chromosome 9 open reading frame, human C2orf82
 ENSGALG00000042764 COG5 component of oligomeric golgi complex 5
cROH and F ST SNP windows (≥0.3)
 ENSGALG00000000242 EBF2 early B cell factor 2
 ENSGALG00000001153 AUTS2 AUTS2, activator of transcription and developmental regulator
 ENSGALG00000003705 VPS13C vacuolar protein sorting 13 homolog C
 ENSGALG00000004045 AGAP1 ArfGAP with GTPase domain, ankyrin repeat and PH domain 1
 ENSGALG00000004116 TRPM8 transient receptor potential cation channel subfamily M member 8
 ENSGALG00000006237 PKN2 protein kinase N2
 ENSGALG00000007555 CCND1 cyclin D1
 ENSGALG00000007556 LTO1 LTO1, ABCE1 maturation factor
 ENSGALG00000015402 C3orf38 chromosome 3 open reading frame 38
 ENSGALG00000015403 EPHA3 EPH receptor A3
 ENSGALG00000016518 PHKA2 phosphorylase kinase regulatory subunit alpha
 ENSGALG00000016522 PPEF1 protein phosphatase with EF-hand domain 1
 ENSGALG00000016529 CDKL5 cyclin dependent kinase like 5
 ENSGALG00000022866 ZNF654 zinc finger protein 654
 ENSGALG00000025253 gga-mir-1694 gga-mir-1694
 ENSGALG00000028376 FGF19 fibroblast growth factor 19
 ENSGALG00000030580 RPS6KA5 ribosomal protein S6 kinase A5
 ENSGALG00000032958 AMPH amphiphysin
 ENSGALG00000034119 novel gene collagen type XV alpha 1 chain
 ENSGALG00000035116 STAG1 stromal antigen 1
 ENSGALG00000035906 YTHDC1 YTH domain containing 1
 ENSGALG00000036938 RALYL RALY RNA binding protein like
 ENSGALG00000038730 GIGYF2 GRB10 interacting GYF protein 2
 ENSGALG00000040167 TPD52 tumor protein D52
cROH and F ST INDEL windows (≥0.3) datasets
 ENSGALG00000000242 EBF2 early B cell factor 2
 ENSGALG00000000667 EDN2 endothelin 2
 ENSGALG00000004045 AGAP1 ArfGAP with GTPase domain, ankyrin repeat and PH domain 1
 ENSGALG00000004116 TRPM8 transient receptor potential cation channel subfamily M member 8
 ENSGALG00000007555 CCND1 cyclin D1
 ENSGALG00000007556 LTO1 LTO1, ABCE1 maturation factor
 ENSGALG00000008163 PSME4 proteasome activator subunit 4
 ENSGALG00000015402 C3orf38 chromosome 3 open reading frame 38
 ENSGALG00000015403 EPHA3 EPH receptor A3
 ENSGALG00000016518 PHKA2 phosphorylase kinase regulatory subunit alpha
 ENSGALG00000016522 PPEF1 protein phosphatase with EF-hand domain 1
 ENSGALG00000016529 CDKL5 cyclin dependent kinase like 5
 ENSGALG00000022866 ZNF654 zinc finger protein 654
 ENSGALG00000025789 gga-mir-6614 gga-mir-6614
 ENSGALG00000027632 ACYP2 acylphosphatase 2
 ENSGALG00000027960 GRPR gastrin releasing peptide receptor
 ENSGALG00000028376 FGF19 fibroblast growth factor 19
 ENSGALG00000034516 SHISA6 shisa family member 6
 ENSGALG00000035116 STAG1 stromal antigen 1
 ENSGALG00000035906 YTHDC1 YTH domain containing 1
 ENSGALG00000036810 novel gene --
 ENSGALG00000036938 RALYL RALY RNA binding protein like
 ENSGALG00000038730 GIGYF2 GRB10 interacting GYF protein 2
 ENSGALG00000039102 TOX thymocyte selection associated high mobility
 ENSGALG00000040322 novel gene --
cROH and F ST SNP and INDEL windows (≥0.3) datasets
 ENSGALG00000000242 EBF2 early B cell factor 2
 ENSGALG00000004045 AGAP1 ArfGAP with GTPase domain, ankyrin repeat and PH domain 1
 ENSGALG00000004116 TRPM8 transient receptor potential cation channel subfamily M member 8
 ENSGALG00000007555 CCND1 cyclin D1
 ENSGALG00000007556 LTO1 LTO1, ABCE1 maturation factor
 ENSGALG00000015402 C3orf38 chromosome 3 open reading frame 38
 ENSGALG00000015403 EPHA3 EPH receptor A3
 ENSGALG00000016518 PHKA2 phosphorylase kinase regulatory subunit alpha
 ENSGALG00000016522 PPEF1 protein phosphatase with EF-hand domain 1
 ENSGALG00000016529 CDKL5 cyclin dependent kinase like 5
 ENSGALG00000022866 ZNF654 zinc finger protein 654
 ENSGALG00000028376 FGF19 fibroblast growth factor 19
 ENSGALG00000035116 STAG1 stromal antigen 1
 ENSGALG00000035906 YTHDC1 YTH domain containing 1
 ENSGALG00000036938 RALYL RALY RNA binding protein like
 ENSGALG00000038730 GIGYF2 GRB10 interacting GYF protein 2