Identification of selection signatures involved in performance traits in a paternal broiler line

Almeida, Octávio Augusto Costa; Moreira, Gabriel Costa Monteiro; Rezende, Fernanda Marcondes; Boschiero, Clarissa; de Oliveira Peixoto, Jane; Ibelli, Adriana Mercia Guaratini; Ledur, Mônica Corrêa; de Novais, Francisco José; Coutinho, Luiz Lehmann

doi:10.1186/s12864-019-5811-1

BMC Genomics

Table 4 Genes annotated commonly between selection signatures of two or more datasets

From: Identification of selection signatures involved in performance traits in a paternal broiler line

Gene ID	Gene name	Description
F _ST SNP and INDEL windows (≥0.3) datasets
ENSGALG00000000242	EBF2	early B cell factor 2
ENSGALG00000002370	SH2D4B	SH2 domain containing 4B
ENSGALG00000002414	TSPAN14	tetraspanin 14
ENSGALG00000004045	AGAP1	ArfGAP with GTPase domain, ankyrin repeat and PH domain 1
ENSGALG00000004116	TRPM8	transient receptor potential cation channel subfamily M member 8
ENSGALG00000004129	SPP2	secreted phosphoprotein 2
ENSGALG00000007555	CCND1	cyclin D1
ENSGALG00000007556	LTO1	LTO1, ABCE1 maturation factor
ENSGALG00000012542	RASD2	RASD family member 2
ENSGALG00000015402	C3orf38	chromosome 3 open reading frame 38
ENSGALG00000015403	EPHA3	EPH receptor A3
ENSGALG00000015570	GPR63	G protein-coupled receptor 63
ENSGALG00000015573	FHL5	four and a half LIM domains 5
ENSGALG00000016518	PHKA2	phosphorylase kinase regulatory subunit alpha 2
ENSGALG00000016522	PPEF1	protein phosphatase with EF-hand domain 1
ENSGALG00000016529	CDKL5	cyclin dependent kinase like 5
ENSGALG00000016541	novel gene	BEN domain containing 2
ENSGALG00000016543	NHS	NHS actin remodeling regulator
ENSGALG00000022866	ZNF654	zinc finger protein 654
ENSGALG00000026372	novel gene	--
ENSGALG00000028376	FGF19	fibroblast growth factor 19
ENSGALG00000032974	ADAMTS2	ADAM metallopeptidase with thrombospondin type 1 motif 2
ENSGALG00000033076	novel gene	--
ENSGALG00000035116	STAG1	stromal antigen 1
ENSGALG00000035393	LRRC14B	leucine rich repeat containing 14B
ENSGALG00000035906	YTHDC1	YTH domain containing 1
ENSGALG00000036204	novel gene	--
ENSGALG00000036327	NGEF	neuronal guanine nucleotide exchange
ENSGALG00000036730	MRPS35	mitochondrial ribosomal protein S35
ENSGALG00000036938	RALYL	RALY RNA binding protein like
ENSGALG00000038154	YAP1	Yes associated protein 1
ENSGALG00000038730	GIGYF2	GRB10 interacting GYF protein 2
ENSGALG00000039139	TNS3	tensin 3
ENSGALG00000039690	STMN2	stathmin 2
ENSGALG00000039738	SLC9A3	solute carrier family 9 member A3
ENSGALG00000040264	C9H2ORF82	chromosome 9 open reading frame, human C2orf82
ENSGALG00000042764	COG5	component of oligomeric golgi complex 5
cROH and F _ST SNP windows (≥0.3)
ENSGALG00000000242	EBF2	early B cell factor 2
ENSGALG00000001153	AUTS2	AUTS2, activator of transcription and developmental regulator
ENSGALG00000003705	VPS13C	vacuolar protein sorting 13 homolog C
ENSGALG00000004045	AGAP1	ArfGAP with GTPase domain, ankyrin repeat and PH domain 1
ENSGALG00000004116	TRPM8	transient receptor potential cation channel subfamily M member 8
ENSGALG00000006237	PKN2	protein kinase N2
ENSGALG00000007555	CCND1	cyclin D1
ENSGALG00000007556	LTO1	LTO1, ABCE1 maturation factor
ENSGALG00000015402	C3orf38	chromosome 3 open reading frame 38
ENSGALG00000015403	EPHA3	EPH receptor A3
ENSGALG00000016518	PHKA2	phosphorylase kinase regulatory subunit alpha
ENSGALG00000016522	PPEF1	protein phosphatase with EF-hand domain 1
ENSGALG00000016529	CDKL5	cyclin dependent kinase like 5
ENSGALG00000022866	ZNF654	zinc finger protein 654
ENSGALG00000025253	gga-mir-1694	gga-mir-1694
ENSGALG00000028376	FGF19	fibroblast growth factor 19
ENSGALG00000030580	RPS6KA5	ribosomal protein S6 kinase A5
ENSGALG00000032958	AMPH	amphiphysin
ENSGALG00000034119	novel gene	collagen type XV alpha 1 chain
ENSGALG00000035116	STAG1	stromal antigen 1
ENSGALG00000035906	YTHDC1	YTH domain containing 1
ENSGALG00000036938	RALYL	RALY RNA binding protein like
ENSGALG00000038730	GIGYF2	GRB10 interacting GYF protein 2
ENSGALG00000040167	TPD52	tumor protein D52
cROH and F _ST INDEL windows (≥0.3) datasets
ENSGALG00000000242	EBF2	early B cell factor 2
ENSGALG00000000667	EDN2	endothelin 2
ENSGALG00000004045	AGAP1	ArfGAP with GTPase domain, ankyrin repeat and PH domain 1
ENSGALG00000004116	TRPM8	transient receptor potential cation channel subfamily M member 8
ENSGALG00000007555	CCND1	cyclin D1
ENSGALG00000007556	LTO1	LTO1, ABCE1 maturation factor
ENSGALG00000008163	PSME4	proteasome activator subunit 4
ENSGALG00000015402	C3orf38	chromosome 3 open reading frame 38
ENSGALG00000015403	EPHA3	EPH receptor A3
ENSGALG00000016518	PHKA2	phosphorylase kinase regulatory subunit alpha
ENSGALG00000016522	PPEF1	protein phosphatase with EF-hand domain 1
ENSGALG00000016529	CDKL5	cyclin dependent kinase like 5
ENSGALG00000022866	ZNF654	zinc finger protein 654
ENSGALG00000025789	gga-mir-6614	gga-mir-6614
ENSGALG00000027632	ACYP2	acylphosphatase 2
ENSGALG00000027960	GRPR	gastrin releasing peptide receptor
ENSGALG00000028376	FGF19	fibroblast growth factor 19
ENSGALG00000034516	SHISA6	shisa family member 6
ENSGALG00000035116	STAG1	stromal antigen 1
ENSGALG00000035906	YTHDC1	YTH domain containing 1
ENSGALG00000036810	novel gene	--
ENSGALG00000036938	RALYL	RALY RNA binding protein like
ENSGALG00000038730	GIGYF2	GRB10 interacting GYF protein 2
ENSGALG00000039102	TOX	thymocyte selection associated high mobility
ENSGALG00000040322	novel gene	--
cROH and F _ST SNP and INDEL windows (≥0.3) datasets
ENSGALG00000000242	EBF2	early B cell factor 2
ENSGALG00000004045	AGAP1	ArfGAP with GTPase domain, ankyrin repeat and PH domain 1
ENSGALG00000004116	TRPM8	transient receptor potential cation channel subfamily M member 8
ENSGALG00000007555	CCND1	cyclin D1
ENSGALG00000007556	LTO1	LTO1, ABCE1 maturation factor
ENSGALG00000015402	C3orf38	chromosome 3 open reading frame 38
ENSGALG00000015403	EPHA3	EPH receptor A3
ENSGALG00000016518	PHKA2	phosphorylase kinase regulatory subunit alpha
ENSGALG00000016522	PPEF1	protein phosphatase with EF-hand domain 1
ENSGALG00000016529	CDKL5	cyclin dependent kinase like 5
ENSGALG00000022866	ZNF654	zinc finger protein 654
ENSGALG00000028376	FGF19	fibroblast growth factor 19
ENSGALG00000035116	STAG1	stromal antigen 1
ENSGALG00000035906	YTHDC1	YTH domain containing 1
ENSGALG00000036938	RALYL	RALY RNA binding protein like
ENSGALG00000038730	GIGYF2	GRB10 interacting GYF protein 2

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ISSN: 1471-2164

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