Identification of selection signatures involved in performance traits in a paternal broiler line

BMC Genomics

Table 5 MeSH enrichment analysis of genes annotated in candidate selection signatures

MeSH term (MeSH ID)	Gene count	P-value	BH^a	Dataset^b
Matrilin Proteins (D064235)	3	0.00008523	0.01605961	a
Muscle, Skeletal (D018482)	9	0.00037904	0.04927546	a
Salmonella Infections, Animal (D012481)	2	0.02170325	0.02893767	b
Adipose Tissue (D000273)	9	0.00246916	0.0157409	c
Cystatins (D015891)	2	0.00018075	0.01590614	d
Cystatins (D015891)	2	0.00019528	0.02089512	e
Tyrosine (D014443)	3	0.00085140	0.03746136	d
Pregnancy in Diabetics (D011254)	1	0.00703107	0.03515533	d
Pregnancy in Diabetics (D011254)	1	0.00730629	0.03653145	e
Hyperglycemia (D006943)	1	0.01748688	0.04066230	d
Hyperglycemia (D006943)	1	0.01816762	0.04223941	e

^aBenjamini & Hochberg procedure for controlling false discovery rate (FDR) [40]
^bAnalysis considering dataset of: (a) 232 genes annotated in cROH of pools shared between at least 12 animals of both generations; (b) 71 genes annotated in cROH of pools shared exclusively between 7th animals; (c) 1318 genes annotated in cROH of pools shared between at least four 16th animals more than 7th’s; (d) 56 genes annotated in F_ST windows of SNP data (FST ≥ 0.3); and (e) 60 genes annotated in FST windows of INDEL data (FST ≥ 0.3)

ISSN: 1471-2164