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Table 1 Assembly metrics for the transcriptomes used in the differential expression analysis of each semispecies

From: The effect of Wolbachia on gene expression in Drosophila paulistorum and its implications for symbiont-induced host speciation

 

AM

CA

OR

Number of contigs (ORFs)

35233

36422

33680

Maximum contig length

26253

27348

23729

Average contig length

1384

1284

1374

Contig N50

1923

1781

1889

BUSCO marker recovery (%)

 Arthropod

98.50

98.50

98.78

 Insecta

98.01

98.13

98.37

 Diptera

95.68

95.61

95.93

ORF completeness (%)

 Complete

41.82

37.32

41.20

 3-prime partial

12.74

13.68

13.23

 5-prime partial

23.13

23.07

23.41

 Internal

22.31

25.93

22.16

ORFs associated to: (%)

 Drosophila

77.94

77.28

82.92

 Wolbachia

0.00

0.00

1.43

 Other bacteria

6.36

10.10

3.33

 Yeast

1.18

0.98

0.96

 Not assigneda

14.51

11.64

11.35

  1. a Non-assigned ORFs didn't fulfill our alignment similarity threshold for annotation (see Materials and Methods)
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BMC Genomics

ISSN: 1471-2164

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