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Table 1 Assembly metrics for the transcriptomes used in the differential expression analysis of each semispecies

From: The effect of Wolbachia on gene expression in Drosophila paulistorum and its implications for symbiont-induced host speciation

  AM CA OR
Number of contigs (ORFs) 35233 36422 33680
Maximum contig length 26253 27348 23729
Average contig length 1384 1284 1374
Contig N50 1923 1781 1889
BUSCO marker recovery (%)
 Arthropod 98.50 98.50 98.78
 Insecta 98.01 98.13 98.37
 Diptera 95.68 95.61 95.93
ORF completeness (%)
 Complete 41.82 37.32 41.20
 3-prime partial 12.74 13.68 13.23
 5-prime partial 23.13 23.07 23.41
 Internal 22.31 25.93 22.16
ORFs associated to: (%)
Drosophila 77.94 77.28 82.92
Wolbachia 0.00 0.00 1.43
 Other bacteria 6.36 10.10 3.33
 Yeast 1.18 0.98 0.96
 Not assigneda 14.51 11.64 11.35
  1. a Non-assigned ORFs didn't fulfill our alignment similarity threshold for annotation (see Materials and Methods)