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Table 3 Ten most significantly enriched GO terms in each condition of the OR semispecies

From: The effect of Wolbachia on gene expression in Drosophila paulistorum and its implications for symbiont-induced host speciation

GO Term Annotation Nr Ann.a Nr DEa Nr Exp.a Signif.a
Female abdomen upregulated
 GO:0045214 sarcomere organization 27 12 0.58 9.20E-14
 GO:0030239 myofibril assembly 38 18 0.82 4.90E-09
 GO:0007498 mesoderm development 74 12 1.6 4.80E-08
 GO:0006936 muscle contraction 23 10 0.5 4.50E-07
 GO:0071688 striated muscle myosin thick filament assembly 5 4 0.11 1.00E-06
 GO:0007015 actin filament organization 111 12 2.4 2.30E-06
 GO:0034446 substrate adhesion-dependent cell spreading 7 4 0.15 7.00E-06
 GO:0006941 striated muscle contraction 8 4 0.17 1.40E-05
 GO:0060361 flight 10 4 0.22 4.00E-05
 GO:0007519 skeletal muscle tissue development 7 3 0.15 0.00033
Female abdomen downregulated
 GO:0031122 cytoplasmic microtubule organization 20 5 0.31 9.80E-06
 GO:0006270 DNA replication initiation 23 5 0.35 2.10E-05
 GO:0007147 female meiosis II 5 3 0.08 3.40E-05
 GO:0007338 single fertilization 27 6 0.41 0.00019
 GO:0006277 DNA amplification 21 3 0.32 0.00023
 GO:0007280 pole cell migration 21 4 0.32 0.00025
 GO:0006013 mannose metabolic process 10 3 0.15 0.00038
 GO:0071480 cellular response to gamma radiation 10 3 0.15 0.00038
 GO:0006517 protein deglycosylation 13 3 0.2 0.00089
 GO:0048640 negative regulation of developmental growth 67 5 1.02 0.00131
Female head upregulated
 GO:0016059 deactivation of rhodopsin mediated signaling 16 3 0.04 6.60E-06
 GO:0042052 rhabdomere development 36 3 0.09 8.10E-05
 GO:0007601 visual perception 18 2 0.04 0.00083
 GO:0045494 photoreceptor cell maintenance 29 2 0.07 0.00216
 GO:0050830 defense response to Gram-positive bacterium 36 2 0.09 0.00331
 GO:2000370 positive regulation of clathrin-mediated endocytosis 5 1 0.01 0.01202
 GO:0051282 regulation of sequestering of calcium ion 5 1 0.01 0.01202
 GO:0051966 regulation of synaptic transmission, glutamatergic 5 1 0.01 0.01202
 GO:0050913 sensory perception of bitter taste 5 1 0.01 0.01202
 GO:0007604 phototransduction, UV 5 1 0.01 0.01202
Female head downregulated
 GO:0002181 cytoplasmic translation 86 28 1.78 9.10E-27
 GO:0055114 oxidation-reduction process 472 37 9.78 3.60E-10
 GO:0046653 tetrahydrofolate metabolic process 5 4 0.1 8.70E-07
 GO:0000028 ribosomal small subunit assembly 12 5 0.25 2.50E-06
 GO:0006414 translational elongation 19 5 0.39 3.30E-05
 GO:0006730 one-carbon metabolic process 14 4 0.29 0.00015
 GO:0006164 purine nucleotide biosynthetic process 83 5 1.72 0.00042
 GO:0006635 fatty acid beta-oxidation 31 5 0.64 0.00134
 GO:0017085 response to insecticide 12 3 0.25 0.00167
 GO:0009620 response to fungus 54 4 1.12 0.00214
Male abdomen upregulated
 GO:0045214 sarcomere organization 27 9 0.27 3.00E-12
 GO:0030239 myofibril assembly 38 14 0.39 6.50E-09
 GO:0014866 skeletal myofibril assembly 7 4 0.07 3.40E-07
 GO:0006936 muscle contraction 23 8 0.23 9.80E-07
 GO:0060361 flight 10 4 0.1 2.00E-06
 GO:0007629 flight behavior 25 5 0.25 4.30E-06
 GO:0007498 mesoderm development 74 7 0.75 9.00E-06
 GO:0071688 striated muscle myosin thick filament assembly 5 3 0.05 1.00E-05
 GO:0007015 actin filament organization 111 8 1.13 1.60E-05
 GO:0006099 tricarboxylic acid cycle 34 5 0.35 2.10E-05
Male abdomen downregulated
 GO:0032504 multicellular organism reproduction 943 35 23.13 6.50E-16
 GO:0055114 oxidation-reduction process 472 37 11.58 5.50E-11
 GO:0006508 proteolysis 677 33 16.61 1.50E-06
 GO:0009631 cold acclimation 8 4 0.2 2.30E-05
 GO:0006629 lipid metabolic process 370 28 9.08 3.30E-05
 GO:0042364 water-soluble vitamin biosynthetic process 7 3 0.17 0.00047
 GO:0042761 very long-chain fatty acid biosynthetic process 16 4 0.39 0.00051
 GO:0045434 negative regulation of female receptivity,postmating 8 3 0.2 0.00074
 GO:0006465 signal peptide processing 8 3 0.2 0.00074
 GO:0005975 carbohydrate metabolic process 410 22 10.06 0.00187
Male head upregulated
 GO:0055093 response to hyperoxia 7 1 0.01 0.0053
 GO:0019731 antibacterial humoral response 28 1 0.02 0.0212
 GO:0045793 positive regulation of cell size 29 1 0.02 0.0219
 GO:0042052 rhabdomere development 36 1 0.03 0.0271
 GO:0050830 defense response to Gram-positive bacterium 36 1 0.03 0.0271
 GO:0030307 positive regulation of cell growth 40 1 0.03 0.0301
 GO:0008286 insulin receptor signaling pathway 42 1 0.03 0.0316
 GO:0018105 peptidyl-serine phosphorylation 42 1 0.03 0.0316
 GO:0040018 positive regulation of multicellular organism 44 1 0.03 0.0331
 GO:0046620 regulation of organ growth 49 1 0.04 0.0368
Male head downregulated
 GO:0055114 oxidation-reduction process 472 45 10.14 4.40E-19
 GO:1901606 alpha-amino acid catabolic process 35 7 0.75 2.10E-05  
 GO:0046653 tetrahydrofolate metabolic process 5 3 0.11 9.40E-05
 GO:0009620 response to fungus 54 5 1.16 0.00013
 GO:0006730 one-carbon metabolic process 14 4 0.3 0.00017
 GO:0019236 response to pheromone 15 4 0.32 0.00023
 GO:0042559 pteridine-containing compound biosynthetic process 7 3 0.15 0.00032
 GO:0072329 monocarboxylic acid catabolic process 40 3 0.86 0.00046
 GO:0005977 glycogen metabolic process 15 5 0.32 0.00049
 GO:0006098 pentose-phosphate shunt 8 3 0.17 0.0005
  1. aNr Ann. Number of times a GO term appears in the reference gene universe. Nr DE Number of DE genes which are annotated with the GO term. Nr Exp. Number of times a GO term would be expected to appear in the DE genes dataset. Signif Significance value in Fishers’ test