Table 2 QTL for cottonseed traits identified across three environments

HSW

qHSWA01.1

2016CQ

Marker1095Marker1475

83.385

Marker1766

3.34

0.52

17.1

2017AY

Marker1050Marker1444

80.444

Marker1682

3.07

0.45

15.2

qHSWA01.2

2016CQ

Marker2119Marker2188

105.852

Marker2140

2.33

0.44

12.3

2017AY

Marker2060Marker2271

108.794

Marker2270

2.76

0.43

13.7

qHSWA09.1

2016CQ

Marker11851Marker11864

117.677

Marker11859

2.18

0.43

11.5

qHSWA11.1

2016CQ

Marker13572Marker13721

59.099

Marker13615

3.87

0.60

19.5

2016HN

Marker13572Marker13746

75.349

Marker13740

2.68

0.38

14

2017AY

Marker13720Marker13746

75.349

Marker13740

2.65

0.44

13.2

qHSWD02.1

2017AY

Marker18193Marker18204

40.414

Marker18200

2.07

0.38

10.5

qHSWD02.2

2016CQ

Marker18224Marker18299

51.754

Marker18289

2.03

0.41

10.8

qHSWD03.1

2016CQ

Marker18918Marker18934

107.899

Marker18928

9.22

0.83

40.4

2016HN

Marker18918Marker18934

106.722

Marker18921

9.37

0.66

40.9

2017AY

Marker18918Marker18940

107.899

Marker18928

9.01

0.76

38.3

qHSWD05.1

2017AY

Marker19701Marker19762

119.944

Marker19721

2.48

0.56

12.4

qHSWD05.2

2016CQ

Marker20000Marker20073

217.105

Marker20039

3.36

0.61

17.2

qHSWD09.1

2016HN

Marker22228Marker22277

17.959

Marker22254

2.27

0.34

12

2017AY

Marker22228Marker22277

18.555

Marker22255

3.75

0.50

18.2

qHSWD09.2

2017HN

Marker22575Marker22599

116.855

Marker22592

2.23

0.35

11.8

2017AY

Marker22575Marker22599

114.931

Marker22590

3.81

0.51

18.5

qHSWD13.1

2017HN

Marker25633Marker25644

24.158

Marker25641

2.54

0.36

13.3

2017AY

Marker25633Marker25662

24.158

Marker25641

4.07

0.52

19.6

HKW

qHKWA01.1

2016CQ

Marker1095Marker1248

83.973

Marker1779

3.14

0.32

17.6

2016HN

Marker1095Marker1796

82.797

Marker1750

2.44

0.28

12.9

2017AY

Marker1095Marker1796

83.973

Marker1777

3.51

0.39

18.3

qHKWA01.2

2016CQ

Marker2060Marker2271

107.029

Marker2195

2.77

0.30

15.6

2016HN

Marker2119Marker1822

107.029

Marker2195

2.32

0.28

12.4

2017AY

Marker2060Marker2271

108.794

Marker2270

2.89

0.36

15.3

qHKWA11.1

2016CQ

Marker13724Marker13746

75.349

Marker13740

2.47

0.30

14.1

2016HN

Marker13572Marker13746

75.349

Marker13740

2.94

0.32

15.4

2017AY

Marker13721Marker13746

75.349

Marker13740

2.4

0.34

12.9

qHKWD01.1

2016HN

Marker17803Marker17824

69.664

Marker17810

2.05

0.27

11

qHKWD01.2

2016CQ

Marker18034Marker18045

106.31

Marker18037

2.15

0.27

12.4

qHKWD03..1

2016CQ

Marker18922Marker18940

107.899

Marker18928

14.15

0.61

58.1

2016HN

Marker18918Marker18934

107.899

Marker18928

15.25

0.62

58

2017AY

Marker18922Marker18940

112.14

Marker18935

10.64

0.65

45.8

qHKWD09..1

2017AY

Marker22228Marker22290

18.555

Marker22255

3.83

0.41

19.8

qHKWD13..1

2016CQ

Marker25627Marker25644

24.158

Marker25641

2.52

0.29

14.3

2017AY

Marker25627Marker25644

24.158

Marker25641

3.15

0.38

16.6

TKL

qTKLA05.1

2016CQ

Marker6368Marker6440

49.956

Marker6433

4.04

1.27

20.8

2016HN

Marker6391Marker6437

49.956

Marker6433

2.18

1.00

11.5

2017AY

Marker6368Marker6437

45.089

Marker6388

3.82

1.45

19.1

qTKLA11.1

2016CQ

Marker12954Marker13001

29.286

Marker12983

2.3

0.99

12.4

qTKLA12.1

2016CQ

Marker13902Marker13921

6.443

Marker13906

2.5

1.05

13.4

2016HN

Marker13904Marker13922

6.443

Marker13906

2.11

1.01

11.2

qTKLD02.1

2016CQ

Marker18466Marker18541

72.256

Marker18639

3.83

1.25

19.8

2016HN

Marker18541Marker18658

83.832

Marker18645

2.73

1.16

14.2

2017AY

Marker18441Marker18643

72.256

Marker18639

3.22

1.35

16.3

qTKLD08.1

2016HN

Marker21909Marker21965

49.622

Marker21942

2.24

1.02

11.8

qTKLD13.1

2016CQ

Marker25619Marker25633

18.006

Marker25627

2.29

0.98

12.4

2017AY

Marker25619Marker25633

17.389

Marker25620

2.53

1.22

13.1

TKW

qTKWA01.1

2016CQ

Marker1095Marker1796

80.444

Marker1683

2.58

0.76

14

2016HN

Marker1651Marker1785

82.797

Marker1761

2.26

0.89

11.9

2017AY

Marker1581Marker1599

77.502

Marker1590

2.1

0.72

11

qTKWA08.1

2017AY

Marker10504Marker10552

69.174

Marker10502

2.05

0.72

10.7

qTKWA11.1

2016CQ

Marker13572Marker13746

55.26

Marker13613

3.03

0.88

16.2

2016HN

Marker13604Marker13722

57.005

Marker13614

2.56

1.01

13.4

2017AY

Marker13572Marker13718

55.26

Marker13613

2.29

0.80

11.9

qTKWD01.1

2017AY

Marker18034Marker18037

103.839

Marker18038

2.14

0.74

11.2

qTKWD03.1

2016CQ

Marker18922Marker18940

107.899

Marker18928

14.86

1.63

58

2016HN

Marker18918Marker18934

107.899

Marker18928

12.88

1.93

51.5

2017AY

Marker18933Marker18978

112.14

Marker18935

9

1.43

39.3

qTKWD09.1

2017AY

Marker22575Marker22599

114.931

Marker22588

2.85

0.85

14.6

KOC

qKOCA01.1

2016CQ

Marker990Marker1248

82.797

Marker1750

2.83

1.13

14.9

2017AY

Marker1734Marker1798

83.973

Marker1774

2.43

1.07

12.2

qKOCA01.2

2016CQ

Marker2014Marker2271

105.852

Marker2138

3.49

1.25

18

qKOCA03.1

2017AY

Marker4951Marker5025

44.143

Marker4961

2.3

1.04

11.6

qKOCA08.1

2016CQ

Marker10503Marker10582

72.718

Marker10567

2.69

1.11

14.2

qKOCA09.1

2016HN

Marker10981Marker11001

37.502

Marker10991

3.69

1.24

18.7

qKOCA11.1

2017AY

Marker13724Marker13746

72.492

Marker13726

2.07

1.04

10.5

qKOCA13.1

2017AY

Marker16773Marker16984

136.821

Marker16970

2.4

1.07

12.1

qKOCA13.2

2016CQ

Marker17148Marker17212

164.157

Marker17150

3.32

1.22

17.2

qKOCD02.1

2016CQ

Marker18421Marker18439

62.907

Marker18431

3.2

1.20

16.6

qKOCD03.1

2016CQ

Marker18933Marker18940

112.14

Marker18935

11.48

2.13

47.9

2016HN

Marker18933Marker18940

112.14

Marker18935

3.54

1.26

18

2017AY

Marker18918Marker18978

135.298

Marker18977

4.84

1.54

22.8

qKOCD05.1

2017AY

Marker19712Marker19766

125.411

Marker19762

2.24

1.40

11.3

qKOCD09.1

2016CQ

Marker22592Marker22602

120.918

Marker22600

2.02

0.99

10.8

2017AY

Marker22600Marker22609

128.058

Marker22603

2.25

1.07

11.4

KPC

qKPCA01.1

2016CQ

Marker1050Marker1599

75.135

Marker1105

2.87

0.61

15.1

qKPCA01.2

2017AY

Marker1766Marker1796

83.973

Marker1777

2.1

1.23

10.7

qKPCA01.3

2016CQ

Marker2119Marker2271

105.852

Marker2140

3.95

0.70

20.1

qKPCA08.1

2016CQ

Marker10273Marker10297

47.49

Marker10290

2.16

0.54

11.6

qKPCA08.2

2016CQ

Marker10511Marker10600

72.13

Marker10561

2.75

0.59

14.5

qKPCA09.1

2016HN

Marker10981Marker11001

37.502

Marker10991

2.88

1.51

14.9

qKPCA11.1

2017AY

Marker13724Marker13740

72.492

Marker13726

2.12

1.29

10.7

qKPCA13.1

2017AY

Marker17035Marker17090

151.357

Marker17079

2.12

1.25

10.7

qKPCD02.1

2016CQ

Marker18429Marker18433

62.907

Marker18431

4.82

0.77

24

qKPCD02.2

2016HN

Marker18645Marker18658

84.427

Marker18646

2.05

1.32

10.9

qKPCD03.1

2016CQ

Marker18922Marker18940

112.14

Marker18935

8.81

1.03

39.4

2016HN

Marker18933Marker18940

112.14

Marker18935

11.78

2.81

48.4

2017AY

Marker18933Marker18940

112.14

Marker18935

9.91

2.52

41.2

qKPCD09.1

2017AY

Marker22586Marker22599

116.855

Marker22592

2.53

1.39

12.7