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Table 3 Matrix of similarity at Intra-Date Palm SNPs Sites. Only SNPs varying between date palm cultivars are documented, first number is total count of similar SNP calls per total SNPs called between two samples

From: Novel subpopulations in date palm (Phoenix dactylifera) identified by population-wide organellar genome sequencing

Mitochondria

AG2

AG1

NA1

NA2

P

P

P

P

O

15-JBR-AE

43-KHLS-QA

69-MDJL-US

DegNoor

P24-SYL-US

P3-ROE-US

P6-CAN-US

Q19-THE-US

BraheaSpp

Sample

 15-JBR-AE

168/168

83/168

50/168

82/168

79/168

95/160

98/166

100/167

75/130

 43-KHLS-QA

83/168

168/168

43/168

159/168

74/168

94/160

89/166

93/167

70/130

 69-MDJL-US

50/168

43/168

168/168

44/168

129/168

91/160

108/166

102/167

68/130

 DegNoor

82/168

159/168

44/168

168/168

75/168

93/160

88/166

94/167

68/130

 P24-SYL-US

79/168

74/168

129/168

75/168

168/168

112/160

119/166

116/167

75/130

 P3-ROE-US

95/160

94/160

91/160

93/160

112/160

160/160

128/159

129/160

93/125

 P6-CAN-US

98/166

89/166

108/166

88/166

119/166

128/159

166/166

143/165

92/130

 Q19-THE-US

100/167

93/167

102/167

94/167

116/167

129/160

143/165

167/167

94/130

 BraheaSpp

75/130

70/130

68/130

68/130

75/130

93/125

92/130

94/130

130/130

Chloroplast

Sample

 15-JBR-AE

37/37

26/37

9/37

27/37

15/37

23/37

20/37

23/37

21/37

 43-KHLS-QA

26/37

37/37

4/37

36/37

16/37

24/37

25/37

24/37

21/37

 69-MDJL-US

9/37

4/37

37/37

5/37

25/37

16/37

16/37

17/37

18/37

 DegNoor

27/37

36/37

5/37

37/37

17/37

25/37

26/37

25/37

22/37

 P24-SYL-US

15/37

16/37

25/37

17/37

37/37

28/37

26/37

29/37

28/37

 P3-ROE-US

23/37

24/37

16/37

25/37

28/37

37/37

33/37

36/37

33/37

 P6-CAN-US

20/37

25/37

16/37

26/37

26/37

33/37

37/37

34/37

31/37

 Q19-THE-US

23/37

24/37

17/37

25/37

29/37

36/37

34/37

37/37

34/37

 braheaSpp

21/37

21/37

18/37

22/37

28/37

33/37

31/37

34/37

37/37