Traits | SNP | Chr | Position | QTL span (kb) | 2015WS | 2016DS | Source: http://qtaro.abr.affrc.go.jp | |||||
---|---|---|---|---|---|---|---|---|---|---|---|---|
p-value | R2 (%) | FDR | p-value | R2 (%) | FDR | Gene | QTLs | |||||
NR3 | S4_31728342 | 4 | 31728342 | 2.06 × 10− 7 | 9 | 0.0050 | 2.28 × 10− 7 | 16 | 0.00552 | nal1(nal5) [48] | ||
RHL | S5_15470847 | 5 | 15470847 | 0.033a | 1.99 × 10− 7 | 11 | 0.0048 | 5.20 × 10−8 | 12 | 0.00126 | ||
S5_15470880 | 5 | 15470880 | 4.31 × 10−6 | 9 | 0.0523 | 6.79 × 10− 7 | 10 | 0.00823 | ||||
RHD | S5_15470880 | 5 | 15470880 | 4.34 × 10−6 | 12 | 0.0603 | 2.04 × 10− 7 | 11 | 0.00495 | OsIPT3 [52]; OsEXPA3 [531] | ||
FLA | S5_15133031 | 5 | 15133031 | 2.88 × 10− 8 | 19 | 0.0007 | 1.50 × 10− 7 | 18 | 0.00357 | |||
S4_21832119 | 4 | 21832119 | 4.75 × 10− 6 | 16 | 0.0575 | 2.95 × 10− 7 | 18 | 0.00357 | tdd1 [54] | |||
FLAngle | S9_19178976 | 9 | 19178976 | 1.82 × 10− 7 | 12 | 0.0044 | 2.99 × 10− 7 | 13 | 0.00725 | TAC1 [55] | ||
DTFirst | S6_16444037 | 6 | 16444037 | 0.045a | 2.04 × 10− 7 | 18 | 0.0032 | 3.40 × 10− 7 | 19 | 0.00824 | qGP-6 [58] | |
S6_16444038 | 6 | 16444038 | 2.62 × 10− 7 | 18 | 0.0032 | 1.00 × 10− 6 | 19 | 0.01212 | ||||
S6_16444082 | 6 | 16444082 | ||||||||||
DTFull | S11_24806601 | 11 | 24806601 | 0.036a | 1.67 × 10− 7 | 15 | 0.0040 | |||||
S11_24806565 | 11 | 24806565 | 2.47 × 10−7 | 20 | 0.00600 | |||||||
S11_24806596 | 11 | 24806596 | 3.41 × 10−7 | 15 | 0.0041 | 2.84 × 10−6 | 18 | 0.03302 | ||||
Spad | S2_16191048 | 2 | 16191048 | 177 | 2.43 × 10−7 | 14 | 0.0059 | 5.18 × 10−9 | 18 | 0.00013 | OsWRKY42 [60] | Ghd7 [61] |
S2_16013833 | 2 | 16013833 | 1.26 × 10− 6 | 14 | 0.01523 | |||||||
BS | S3_21737519 | 3 | 21737519 | 9.39 × 10−8 | 12 | 0.0023 | 2.76 × 10−7 | 19 | 0.00669 | |||
SD | S2_31078747 | 2 | 31078747 | 3.69 × 10−7 | 12 | 0.0089 | 2.47 × 10− 7 | 17 | 0.00599 | bc3 [62] | ||
CD | S2_30984762 | 2 | 30984762 | 93.99 | 9.97 × 10− 7 | 13 | 0.0024 | 2.83 × 10− 7 | 27 | 0.00686 | bc3 [62] | |
S2_30987475 | 2 | 30987475 | 1.03 × 10−6 | 12 | 0.0125 | |||||||
S2_31078747 | 2 | 31078747 | 1.26 × 10−7 | 10 | 0.1020 | |||||||
PHT | S11_17805610 | 11 | 17805610 | 1.88 × 10−7 | 26 | 0.0035 | 1.77 × 10− 7 | 29 | 0.00260 | |||
S1_38481437 | 1 | 38481437 | 2.87 × 10−7 | 26 | 0.0035 | 2.15 × 10− 7 | 29 | 0.00260 | ||||
GY | S11_17412133 | 11 | 17412133 | 0.005a | 2.12 × 10− 7 | 26 | 0.0051 | 3.02 × 10− 7 | 26 | 0.00073 | yld11.1, gpl11.1, gw11.1 [59] | |
S11_17412134 | 11 | 17412134 | 4.11 × 10−6 | 24 | 0.0498 | 1.08 × 10−6 | 24 | 0.00869 | ||||
S11_17412139 | 11 | 17412139 | 6.80 × 10−6 | 24 | 0.0549 | 2.91 × 10−7 | 24 | 0.00352 | ||||
SY | S11_15708717 | 11 | 15708717 | 3.15 × 10−7 | 17 | 0.0076 | 2.20 × 10−7 | 15 | 0.00534 | |||
DTF | S11_17316419 | 11 | 17316419 | 7.71 × 10−8 | 24 | 0.0019 | 1.87 × 10−8 | 30 | 0.00045 | |||
VVG | S1_37653811 | 1 | 37653811 | 14a | 1.52 × 10− 8 | 17 | 0.0004 | 2.23 × 10− 8 | 15 | 0.00054 | ||
S1_37639734 | 1 | 37639734 | 1.70 × 10−7 | 15 | 0.0021 | |||||||
S11_25462225 | 11 | 25462225 | 2.68 × 10−7 | 13 | 0.00325 | |||||||
Fe uptake | S2_29221003 | 2 | 29221003 | 0.012 a | 3.49 × 10−7 | 86 | 0.0083 | |||||
S2_29221015 | 2 | 29221015 | 6.84 × 10− 7 | 81 | 0.0083 | |||||||
N uptake | S5_14987295 | 5 | 14987295 | 3.43 × 10−7 | 90 | 0.0083 | OsIPT3 [52] | |||||
S6_30887442 | 6 | 30887442 | 9.82 × 10−6 | 72 | 0.1190 | OsPTR9 [71] | ||||||
P uptake | S5_14987295 | 5 | 14987295 | 3.36 × 10−7 | 92 | 0.0081 | OsIPT3 [52] | |||||
S6_27868961 | 6 | 27868961 | 3018 | 7.64 × 10−5 | 71 | 0.2644 | OsPTR9 [71] | |||||
S6_30887442 | 6 | 30887442 | 6.45 × 10−6 | 80 | 0.0781 | |||||||
Zn uptake | S7_26042045 | 7 | 26042045 | 3.29 × 10−7 | 90 | 0.0080 | 7–3 [74] |