Skip to main content

Table 2 The 10 most representative Pfam protein domain annotations for DEGs

From: Deep expression analysis reveals distinct cold-response strategies in rubber tree (Hevea brasiliensis)

Genotype Treatment Number of Genes Pfam Domain
RRIM600 upregulated 0 h 13 Protein tyrosine kinase
   11 NB-ARC domain
   8 Protein kinase domain
   7 Plant protein of unknown function
   6 Cytochrome P450
   6 Leucine rich repeat N-terminal domain
   6 PPR repeat
   6 RNA recognition motif
   5 Ribosomal protein
   4 ADP-ribosylation factor family
   4 AP2 domain
   4 D-mannose binding lectin
   4 KH domain
   4 Leucine rich repeat
   4 Ribosomal protein L11, N-terminal domain
   4 Ribosomal protein S8
RRIM600 downregulated 0 h 16 Leucine rich repeat N-terminal domain
   12 Cytochrome P450
   12 Protein kinase domain
   11 NB-ARC domain
   10 PMR5 N-terminal domain
   8 Ankyrin repeats (3 copies)
   8 Glycosyl transferase family 8
   7 Microtubule binding
   6 IQ calmodulin-binding motif
   6 Legume lectin domain
   6 Multicopper oxidase
   6 Zinc-binding RING-finger
   5 Myb-like DNA-binding domain
   5 Peptidase inhibitor I9
   5 Short chain dehydrogenase
   5 TIR domain
RRIM600 upregulated 90 m 13 NB-ARC domain
   13 Protein tyrosine kinase
   9 Leucine rich repeat N-terminal domain
   8 Protein kinase domain
   6 D-mannose binding lectin
   5 Leucine rich repeat
   5 Plant protein of unknown function
   4 Cytochrome P450
   4 UDP-glucuronosyl and UDP-glucosyl transferase
   3 Ammonium Transporter Family
   3 CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B
   3 Leucine rich repeat
   3 TIR domain
   3 Wall-associated receptor kinase C-terminal
   3 Wall-associated receptor kinase galacturonan-binding
RRIM600 downregulated 90 m 25 Protein kinase domain
   22 Leucine rich repeat N-terminal domain
   15 NB-ARC domain
   13 PMR5 N-terminal domain
   12 Cytochrome P450
   11 Zinc-binding RING-finger
   9 Ankyrin repeats (3 copies)
   9 Glycosyl transferase family 8
   8 IQ calmodulin-binding motif
   7 Microtubule binding
   7 Short chain dehydrogenase
RRIM600 upregulated 12 h 17 NB-ARC domain
   10 Protein tyrosine kinase
   9 Leucine rich repeat N-terminal domain
   7 Protein kinase domain
   5 F-box domain
   5 Plant protein of unknown function
   5 TIR domain
   5 UDP-glucuronosyl and UDP-glucosyl transfer
   5 VQ motif
   4 Cytochrome P450
   4 D-mannose binding lectin
   4 Leucine rich repeat
   4 PPR repeat
RRIM600 downregulated 12 h 25 Protein kinase domain
   22 Leucine rich repeat N-terminal domain
   15 NB-ARC domain
   13 PMR5 N-terminal domain
   12 Cytochrome P450
   11 Zinc-binding RING-finger
   9 Ankyrin repeats (3 copies)
   9 Glycosyl transferase family 8
   8 IQ calmodulin-binding motif
   7 Microtubule binding
   7 Short chain dehydrogenase
RRIM600 upregulated 24 h 17 NB-ARC domain
   15 UDP-glucuronosyl and UDP-glucosyl transferase
   14 Cytochrome P450
   14 PPR repeat
   12 Protein kinase domain
   11 Leucine rich repeat N-terminal domain
   11 Protein tyrosine kinase
   9 D-mannose binding lectin
   9 Short chain dehydrogenase
   8 AP2 domain
RRIM600 downregulated 24 h 23 Leucine rich repeat N-terminal domain
   21 Protein kinase domain
   20 NB-ARC domain
   11 TIR domain
   9 Protein tyrosine kinase
   8 Ankyrin repeats (3 copies)
   8 Cytochrome P450
   7 Microtubule binding
   7 PMR5 N-terminal domain
   6 Carbohydrate-binding protein of the ER
   6 Salt stress response/antifungal