Deep expression analysis reveals distinct cold-response strategies in rubber tree (Hevea brasiliensis)

Campos Mantello, Camila; Boatwright, Lucas; da Silva, Carla Cristina; Scaloppi, Erivaldo Jose; de Souza Goncalves, Paulo; Barbazuk, W. Brad; Pereira de Souza, Anete

doi:10.1186/s12864-019-5852-5

BMC Genomics

Table 2 The 10 most representative Pfam protein domain annotations for DEGs

From: Deep expression analysis reveals distinct cold-response strategies in rubber tree (Hevea brasiliensis)

Genotype	Treatment	Number of Genes	Pfam Domain
RRIM600 upregulated	0 h	13	Protein tyrosine kinase
		11	NB-ARC domain
		8	Protein kinase domain
		7	Plant protein of unknown function
		6	Cytochrome P450
		6	Leucine rich repeat N-terminal domain
		6	PPR repeat
		6	RNA recognition motif
		5	Ribosomal protein
		4	ADP-ribosylation factor family
		4	AP2 domain
		4	D-mannose binding lectin
		4	KH domain
		4	Leucine rich repeat
		4	Ribosomal protein L11, N-terminal domain
		4	Ribosomal protein S8
RRIM600 downregulated	0 h	16	Leucine rich repeat N-terminal domain
		12	Cytochrome P450
		12	Protein kinase domain
		11	NB-ARC domain
		10	PMR5 N-terminal domain
		8	Ankyrin repeats (3 copies)
		8	Glycosyl transferase family 8
		7	Microtubule binding
		6	IQ calmodulin-binding motif
		6	Legume lectin domain
		6	Multicopper oxidase
		6	Zinc-binding RING-finger
		5	Myb-like DNA-binding domain
		5	Peptidase inhibitor I9
		5	Short chain dehydrogenase
		5	TIR domain
RRIM600 upregulated	90 m	13	NB-ARC domain
		13	Protein tyrosine kinase
		9	Leucine rich repeat N-terminal domain
		8	Protein kinase domain
		6	D-mannose binding lectin
		5	Leucine rich repeat
		5	Plant protein of unknown function
		4	Cytochrome P450
		4	UDP-glucuronosyl and UDP-glucosyl transferase
		3	Ammonium Transporter Family
		3	CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B
		3	Leucine rich repeat
		3	TIR domain
		3	Wall-associated receptor kinase C-terminal
		3	Wall-associated receptor kinase galacturonan-binding
RRIM600 downregulated	90 m	25	Protein kinase domain
		22	Leucine rich repeat N-terminal domain
		15	NB-ARC domain
		13	PMR5 N-terminal domain
		12	Cytochrome P450
		11	Zinc-binding RING-finger
		9	Ankyrin repeats (3 copies)
		9	Glycosyl transferase family 8
		8	IQ calmodulin-binding motif
		7	Microtubule binding
		7	Short chain dehydrogenase
RRIM600 upregulated	12 h	17	NB-ARC domain
		10	Protein tyrosine kinase
		9	Leucine rich repeat N-terminal domain
		7	Protein kinase domain
		5	F-box domain
		5	Plant protein of unknown function
		5	TIR domain
		5	UDP-glucuronosyl and UDP-glucosyl transfer
		5	VQ motif
		4	Cytochrome P450
		4	D-mannose binding lectin
		4	Leucine rich repeat
		4	PPR repeat
RRIM600 downregulated	12 h	25	Protein kinase domain
		22	Leucine rich repeat N-terminal domain
		15	NB-ARC domain
		13	PMR5 N-terminal domain
		12	Cytochrome P450
		11	Zinc-binding RING-finger
		9	Ankyrin repeats (3 copies)
		9	Glycosyl transferase family 8
		8	IQ calmodulin-binding motif
		7	Microtubule binding
		7	Short chain dehydrogenase
RRIM600 upregulated	24 h	17	NB-ARC domain
		15	UDP-glucuronosyl and UDP-glucosyl transferase
		14	Cytochrome P450
		14	PPR repeat
		12	Protein kinase domain
		11	Leucine rich repeat N-terminal domain
		11	Protein tyrosine kinase
		9	D-mannose binding lectin
		9	Short chain dehydrogenase
		8	AP2 domain
RRIM600 downregulated	24 h	23	Leucine rich repeat N-terminal domain
		21	Protein kinase domain
		20	NB-ARC domain
		11	TIR domain
		9	Protein tyrosine kinase
		8	Ankyrin repeats (3 copies)
		8	Cytochrome P450
		7	Microtubule binding
		7	PMR5 N-terminal domain
		6	Carbohydrate-binding protein of the ER
		6	Salt stress response/antifungal

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ISSN: 1471-2164

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