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Table 2 The identified candidate genes involved in flowering and floral organ development of tree peony

From: De novo sequencing of tree peony (Paeonia suffruticosa) transcriptome to identify critical genes involved in flowering and floral organ development

No. Tree peony gene Unigene ID Length Pathway/Function Arabidopsis gene Arabidopsis GenBank No. Arabidopsis sequence length
1 PsAG Cloned in our lab 1072 Class C floral homeotic gene AG (AGAMOUS) NM_001203837.1 717
2 PsAGL8 unigene 5440 812 others AGL8 (AGAMOUS-Like 8) NM_125484.4 729
3 PsAGL9 unigene 932 1372 Class E floral homeotic gene AGL9 AF015552.1 756
4 PsAGL14 unigene 6460 456 others AGL14 NM_001340739.1 666
5 PsAGL15 unigene 706 1096 Photoperiod AGL15 NM_121382.3 807
6 PsAGL17 unigene 16,415 516 others AGL17 NM_127828.3 684
7 PsAGL18 unigene 17,893 486 Photoperiod AGL17 AF312663.1 721
8 PsAP1 Cloned in our lab 729 Class A floral homeotic gene AP1 (APETALA1) Z16421.1 768
9 PsAP2 unigene 16,681 1335 Class A floral homeotic gene AP2 (APETALA2) NM_001204009.1 1299
10 PsAP3 unigene 17,545 668 Class B floral homeotic gene AP3 (APETALA3) AY142590.1 699
11 PsCAL Cloned in our lab 928 Floral meristem identity gene CAL (CAULIFLOWER) NM_102395.2 768
12 PsCKII unigene14187 402 Photoperiod/Circadian clock CK2 (CASEIN KINASE 2) BT000888.1 1212
13 PsCO Cloned in our lab 1973 Photoperiod CO (CONSTANS) NM_121589.1 1122
14 PsCOL1 unigene 5885 1453 Photoperiod COL1 Y10555.1 1068
15 PSCOL4 Cloned in our lab 1125 Photoperiod COL4 NM_122402.3 1221
16 PsCOL6 unigene 9556 456 others COL6 AY081541.1 1221
17 PsCOL9 unigene 27,384 542 Photoperiod COL9 NM_111644.5 1119
18 PsCOL10 unigene 23,649 405 others COL10 NM_124200.3 1122
19 PsCOL13 Cloned in our lab 236 others COL13 NM_130356.5 999
20 PsCOL14 unigene 5655 1213 others COL14 NM_201860.2 1206
21 PsCOL16 unigene 20,771 827 others COL16 NM_102355 1254
22 PsCRY1 unigene 5046 2118 Photoperiod/Light perception CRY1 (CRYPTOCHROME 1) NM_116961 2046
23 PsCRY 2 unigene 13,974 1211 Photoperiod/Light perception CRY2 U43397.1 1839
24 PsELF3 unigene 25,740 1171 Photoperiod/Circadian clock ELF3 (EARLY FLOWERING 3) NM_128153.2 2088
25 PsELF 4 unigene 15,888 615 Photoperiod/Circadian clock ELF4 NM_129566.2 336
26 Ps ESD4 unigene 17,002 1053 Autonomous ESD4 AJ582719.1 1470
27 PsFCA unigene 18,962 1159 Autonomous FCA NM_179211.2 1518
28 PsFKF1 unigene 14,676 1059 Photoperiod FKF1 (FLAVIN-BINDING, KELCH REPEAT, F-BOX 1) NM_105475.3 1860
29 PsFLC unigene 16,860 522 Floral repressor FLC (FLOWERING LOCUS C) AF537203.1 591
30 PsFLD unigene 21,343 221 Autonomous FLD (FLOWERING LOCUS D) AY849996.1 2370
31 PsFPA unigene 10,623 605 Autonomous FPA NM_129902.2 2577
32 PsFRI unigene 3714 2955 Floral repressor FRI (FRIGIDA) DQ167445.1 1836
33 PsFT unigene 6901 704 Integrator/Floral promoter FT (FLOWERING LOCUS T) AB027504.1 528
34 FY-like Cloned in our lab 2867 Autonomous FY NM_001203373.1 1962
35 PsGAI unigene 1563 2067 GA GAI (GIBBERELLIC ACID INSENSITIVE) NM_101361.2 1602
36 PsGI unigene 20 4423 Photoperiod GI (GIGANTEA) AF105064.1 3522
37 HOS1-like Cloned in our lab 3062 Vernalization/Cold signalling HOS1(HIGH EXPRESSION OF OSMOTICALLY RESPONSIVE GENES 1) NM_129540.5 2784
38 PsLD unigene 11,537 543 Autonomous LD (LUMINIDEPENDENS) GQ177537 5936
39 PsLFY unigene 19,888 431 Integrator LFY (LEAFY) NM_125579.1 1263
40 PsLHY-like unigene 15,485 2083 Photoperiod/Circadian clock LHY (LATE ELONGATED HYPOCOTYL) NM_179237.1 1938
41 PsMAF-like unigene 25,853 548 Floral repressor MAF-like (MADS AFFECTING FLOWERING LIKE) NM_126053 624
42 PsPHYA unigene 26,017 1232 Photoperiod/Light perception PHY-A (PHYTOCHROME A) NM_100828 3369
43 PsPHYB unigene 21,416 730 Photoperiod/Light perception PHY-B EU352781 3507
44 PsPHYC unigene 26,767 787 Photoperiod/Light perception PHY-C JF318768 3336
45 PsPHYE unigene 17,658 1021 Photoperiod/Light perception PHY-E NM_117923.7 3339
46 PsPI unigene 1017 862 Class B floral homeotic gene PI (PISTILLATA) JQ180310.1 627
47 PsPIE1 unigene 17,987 1944 Floral repressor PIE1 (PHOTOPERIOD-INDEPENDENT EARLY FLOWERING 1) AY279398.1 6168
48 PsPIF3 Cloned in our lab 3632 Light signaling PIF3 (PHYTOCHROME INTERACTING FACTOR 3) AF100166.1 1575
49 PsPIF1 unigene 24,639 606 others PIF1 (PHYTOCHROME INTERACTING FACTOR 1) NM_001202630.2 1437
50 PsRGA-like unigene 19,948 1331 GA RGL (REPRESSOR OF GA Like) AY048749.1 1536
51 PsSEP1 unigene 11,191 512 Class E floral homeotic gene SEP1 (SEPALLATA 1) NM_001125758.2 789
52 PsSEP3 Cloned in our lab 413 Class E floral homeotic gene SEP3 NM_102272.4 756
53 PsSEP4 Cloned in our lab 588 Class E floral homeotic gene SEP4 NM_201682.3 564
53 PsSOC1 unigene 13,388 909 Integrator SOC1 (SUPPRESSOR OF OVEREXPRESSION OF CONSTANS1) NM_130128.3 645
54 PsSPL9 unigene 2914 1552 Age SPL9 (Squamosa promoter binding protein-like 9) AJ011639.1 1122
55 PsSVP unigene 327 1239 Floral repressor SVP (SHORT VEGETATIVE PHASE) NM_001161056.1 708
56 PsTEM1 unigene 17,174 614 Photoperiod TEMPRANILLO (TEM1) NM_102367.3 1086
57 PsTFL1 Cloned in our lab 582 Others TFL1 (TERMINAL FLOWER 1) AF466816.1 534
58 PsTFL2 unigene 17,811 1213 Floral repressor TFL2 (TERMINAL FLOWER 2) AB073490.1 1338
59 PsTOC1 unigene 27,722 1108 Photoperiod/Circadian clock TOC1 (TIMING OF CAB 1) AF272039.1 1857
60 PsTOE1 unigene 16,681 1335 Putative floral repressor TOE1 (TARGET OF EAT 1) NM_128415.4 1350
61 PsTOE2 unigene 17,814 514 Putative floral repressor TOE2 (TARGET OF EAT 2) NM_001203647.1 1524
62 PsULT1 unigene10486 553 Flower development ULT1 (ULTRAPETALA1) NM_118959.5 714
63 PsVIN3 Cloned in our lab 1689 Vernalization VIN3 (VERNALIZATION INSENSITIVE 3) KC505474.1 1863
64 PsVRN1 unigene 30,203 428 Vernalization VRN1 (VERNALISATION 1) AF289052.1 1026
65 PsVRN2 Cloned in our lab 2615 Vernalization VRN2 (VERNALISATION 2) AF284500.1 1338
66 WNK1 unigene 326 2411 Photoperiod/Circadian clock WNK1 (WITH NO LYSINE (K) KINASE 1) NM_001035560.1 2034
67 PsZTL unigene 14,676 1059 Photoperiod/Circadian clock ZTL (ZEITLUPE) AF254413.1 1830