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Table 3 Top 20 differentially expressed ncRNAs in goat DPCs and DFs

From: Synchronous profiling and analysis of mRNAs and ncRNAs in the dermal papilla cells from cashmere goats

Transcript_id gene_id DPCs_FPKM/readcount DFs_FPKM/readcount log2(foldchange) p value qvalue
lncRNAs
 XR_001296062.1 1.02E+ 08 1.99008 0 inf 0.000207 0.025161
 LNC_001710 XLOC_075943 5.239176 0.150354 5.122901 0.000488 0.030155
 XR_001917771.1 1.02E+ 08 1.772177 0.137917 3.68365 0.032047 0.142154
 LNC_000335 XLOC_013190 2.363259 0.441866 2.419098 0.003407 0.050636
 XR_001295493.2 1.02E+ 08 7.632797 1.791479 2.091061 0.005455 0.060082
 XR_001295577.2 1.02E+ 08 12.35869 5.636179 1.132737 0.003141 0.049678
 XR_001918397.1 1.09E+ 08 13.92489 7.030079 0.986053 0.013808 0.089779
 XR_001917946.1 1.02E+ 08 3.059054 1.620502 0.916644 0.040454 0.160805
 XR_001297370.2 1.07E+ 08 23.97548 13.86575 0.790034 0.014074 0.090362
 XR_001917801.1 1.09E+ 08 7.39471 4.537434 0.704617 0.014055 0.090362
 LNC_000299 XLOC_011942 0.572715 2.523932 −2.13978 0.025557 0.125133
 XR_001296495.2 1.02E+ 08 1.594773 8.587425 −2.42887 0.001211 0.036929
 LNC_000901 XLOC_040539 0.265664 2.556129 −3.26628 0.000433 0.030155
 XR_001918151.1 1.09E+ 08 1.081655 10.75737 −3.31401 0.000437 0.030155
 LNC_000726 XLOC_032789 0.220355 2.407738 −3.44978 0.002588 0.046272
 LNC_000799 XLOC_035825 0.95753 12.62068 −3.72033 0.000488 0.030155
 XR_310887.3 1.02E+ 08 0.105149 4.113782 −5.28996 0.004512 0.055433
 LNC_000964 XLOC_044020 0.024105 2.700893 −6.80798 0.000945 0.034269
 LNC_000474 XLOC_019528 0 1.968306   0.002211 0.043714
 LNC_000834 XLOC_037289 0 2.67851   0.004903 0.057038
miRNAs
 chi-miR-196b   491.8586 6.14035 5.6981 2.89E-72 1.08E-69
 novel_144   20.20519 0.34253 3.1137 3.87E-09 1.03E-07
 chi-miR-504   163.8782 42.25665 1.7943 3.72E-09 1.03E-07
 chi-miR-10a-5p   74,479.94 22,786.8 1.6405 1.77E-13 7.37E-12
 chi-let-7 g-3p   4.720801 0.367675 1.5577 0.006164 0.046103
 chi-miR-2483-5p   42.33788 13.62568 1.4483 2.48E-05 0.000332
 chi-miR-2483-3p   9.504497 2.10547 1.4247 0.005922 0.045198
 chi-miR-450-5p   1632.57 617.3818 1.3789 6.09E-22 3.79E-20
 chi-miR-449b-3p   24.99155 7.64879 1.3302 0.003109 0.025835
 chi-miR-424-3p   240.5518 91.92476 1.3181 1.07E-08 2.68E-07
 novel_549   1.124597 7.295191 −1.671 0.002183 0.01991
 chi-miR-497-3p   1.025707 8.638641 −1.8433 0.000716 0.007648
 chi-miR-206   0.526303 9.17283 −2.0183 0.000352 0.004241
 chi-miR-497-5p   20.19273 108.0983 −2.1601 3.50E-10 1.09E-08
 chi-miR-9-5p   788.4207 5396.696 −2.7232 1.11E-70 2.08E-68
 chi-miR-99a-3p   1.025707 48.28177 −3.7294 5.73E-14 2.68E-12
 chi-miR-125b-3p   47.34329 760.8219 −3.7448 9.08E-41 6.79E-39
 chi-let-7c-3p   0.802904 53.93692 −3.8687 3.20E-14 1.71E-12
 chi-miR-9-3p   20.93235 416.4388 −4.0787 7.04E-61 8.78E-59
 chi-miR-99a-5p   1572.609 46,948.92 −4.5546 2.87E-55 2.68E-53