Table 3 Top 20 differentially expressed ncRNAs in goat DPCs and DFs
Transcript_id | gene_id | DPCs_FPKM/readcount | DFs_FPKM/readcount | log2(foldchange) | p value | qvalue |
|---|---|---|---|---|---|---|
lncRNAs | ||||||
XR_001296062.1 | 1.02E+ 08 | 1.99008 | 0 | inf | 0.000207 | 0.025161 |
LNC_001710 | XLOC_075943 | 5.239176 | 0.150354 | 5.122901 | 0.000488 | 0.030155 |
XR_001917771.1 | 1.02E+ 08 | 1.772177 | 0.137917 | 3.68365 | 0.032047 | 0.142154 |
LNC_000335 | XLOC_013190 | 2.363259 | 0.441866 | 2.419098 | 0.003407 | 0.050636 |
XR_001295493.2 | 1.02E+ 08 | 7.632797 | 1.791479 | 2.091061 | 0.005455 | 0.060082 |
XR_001295577.2 | 1.02E+ 08 | 12.35869 | 5.636179 | 1.132737 | 0.003141 | 0.049678 |
XR_001918397.1 | 1.09E+ 08 | 13.92489 | 7.030079 | 0.986053 | 0.013808 | 0.089779 |
XR_001917946.1 | 1.02E+ 08 | 3.059054 | 1.620502 | 0.916644 | 0.040454 | 0.160805 |
XR_001297370.2 | 1.07E+ 08 | 23.97548 | 13.86575 | 0.790034 | 0.014074 | 0.090362 |
XR_001917801.1 | 1.09E+ 08 | 7.39471 | 4.537434 | 0.704617 | 0.014055 | 0.090362 |
LNC_000299 | XLOC_011942 | 0.572715 | 2.523932 | −2.13978 | 0.025557 | 0.125133 |
XR_001296495.2 | 1.02E+ 08 | 1.594773 | 8.587425 | −2.42887 | 0.001211 | 0.036929 |
LNC_000901 | XLOC_040539 | 0.265664 | 2.556129 | −3.26628 | 0.000433 | 0.030155 |
XR_001918151.1 | 1.09E+ 08 | 1.081655 | 10.75737 | −3.31401 | 0.000437 | 0.030155 |
LNC_000726 | XLOC_032789 | 0.220355 | 2.407738 | −3.44978 | 0.002588 | 0.046272 |
LNC_000799 | XLOC_035825 | 0.95753 | 12.62068 | −3.72033 | 0.000488 | 0.030155 |
XR_310887.3 | 1.02E+ 08 | 0.105149 | 4.113782 | −5.28996 | 0.004512 | 0.055433 |
LNC_000964 | XLOC_044020 | 0.024105 | 2.700893 | −6.80798 | 0.000945 | 0.034269 |
LNC_000474 | XLOC_019528 | 0 | 1.968306 | 0.002211 | 0.043714 | |
LNC_000834 | XLOC_037289 | 0 | 2.67851 | 0.004903 | 0.057038 | |
miRNAs | ||||||
chi-miR-196b | 491.8586 | 6.14035 | 5.6981 | 2.89E-72 | 1.08E-69 | |
novel_144 | 20.20519 | 0.34253 | 3.1137 | 3.87E-09 | 1.03E-07 | |
chi-miR-504 | 163.8782 | 42.25665 | 1.7943 | 3.72E-09 | 1.03E-07 | |
chi-miR-10a-5p | 74,479.94 | 22,786.8 | 1.6405 | 1.77E-13 | 7.37E-12 | |
chi-let-7 g-3p | 4.720801 | 0.367675 | 1.5577 | 0.006164 | 0.046103 | |
chi-miR-2483-5p | 42.33788 | 13.62568 | 1.4483 | 2.48E-05 | 0.000332 | |
chi-miR-2483-3p | 9.504497 | 2.10547 | 1.4247 | 0.005922 | 0.045198 | |
chi-miR-450-5p | 1632.57 | 617.3818 | 1.3789 | 6.09E-22 | 3.79E-20 | |
chi-miR-449b-3p | 24.99155 | 7.64879 | 1.3302 | 0.003109 | 0.025835 | |
chi-miR-424-3p | 240.5518 | 91.92476 | 1.3181 | 1.07E-08 | 2.68E-07 | |
novel_549 | 1.124597 | 7.295191 | −1.671 | 0.002183 | 0.01991 | |
chi-miR-497-3p | 1.025707 | 8.638641 | −1.8433 | 0.000716 | 0.007648 | |
chi-miR-206 | 0.526303 | 9.17283 | −2.0183 | 0.000352 | 0.004241 | |
chi-miR-497-5p | 20.19273 | 108.0983 | −2.1601 | 3.50E-10 | 1.09E-08 | |
chi-miR-9-5p | 788.4207 | 5396.696 | −2.7232 | 1.11E-70 | 2.08E-68 | |
chi-miR-99a-3p | 1.025707 | 48.28177 | −3.7294 | 5.73E-14 | 2.68E-12 | |
chi-miR-125b-3p | 47.34329 | 760.8219 | −3.7448 | 9.08E-41 | 6.79E-39 | |
chi-let-7c-3p | 0.802904 | 53.93692 | −3.8687 | 3.20E-14 | 1.71E-12 | |
chi-miR-9-3p | 20.93235 | 416.4388 | −4.0787 | 7.04E-61 | 8.78E-59 | |
chi-miR-99a-5p | 1572.609 | 46,948.92 | −4.5546 | 2.87E-55 | 2.68E-53 | |