Table 1 General statistics of contigs generated by RNAseq technology for brain gene expression characterization. Only contigs possessing a FPKM greater than 1 for at least one library were considered for annotation and further expression analysis
Number of base pairs in reads | 42491174498 |
Number of reads | 420704698 |
Number of base pairs in contigs (FPKM> 1) | 84028148 |
Number of contigs (FPKM> 1) | 49829 |
N50 | 2663 |
N90 | 816 |
Number of putative micro-satellites | 34440 |
Number of putative SNPs | 420406 |
Number of contigs including SNP | 39484 |