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Table 3 QTLs identified for three seed-germination related traits (GR, SL & FW) in LM6 and ZM6 RIL populations under natural aging treatment

From: Whole-genome mapping identified novel “QTL hotspots regions” for seed storability in soybean (Glycine max L.)

Aging treatment Trait QTL Chromosome (Linkage group) Position (cM) Marker LOD value Additive effect R2 value (%)
Natural-LM6 GR qGR-5-1 5 (A1) 52.31 bin502-bin503 3.63 −0.05 11.13
qGR-5-2 5 (A1) 60.91 bin512-bin513 5.07 −0.05 15.05
qGR-17–1 17 (D2) 50.41 bin1872-bin1873 3.49 −0.06 12.98
SL qSL-17–1 17 (D2) 38.21 bin1864-bin1865 4.77 −1.04 14.53
qSL-17-2 17 (D2) 45.41 bin1872-bin1873 4.44 −1.04 15.08
FW qFW-4-1 4 (C1) 92.61 bin426-bin427 3.70 2.18 10.80
qFW-5-1 5 (A1) 60.91 bin512-bin513 4.46 −2.45 13.56
qFW-11-1 11 (B1) 76.41 bin1201-bin1202 3.00 2.03 8.97
Natural-ZM6 GR qGR-5-3 5 (A1) 71.91 bin571-bin572 6.64 0.06 16.76
qGR-7-1 7 (M) 114.81 bin891-bin892 3.68 0.05 9.43
qGR-15–1 15 (E) 104.01 bin1942-bin1943 3.78 −0.05 9.13
SL qSL-6-1 6 (C2) 82.61 bin681-bin682 3.20 − 0.83 8.33
qSL-8-1 8 (A2) 70.51 bin958-bin959 3.04 −0.80 7.82
qSL-18–1 18 (G) 96.51 bin2290-bin2290 3.19 −0.81 8.16
FW qFW-5-2 5 (A1) 71.91 bin571-bin572 3.25 1.87 8.57
qFW-9-1 9 (K) 36.01 bin1118-bin1119 5.43 2.44 14.89
  1. GR (germination rate), SL (seedling length) and FW (fresh weight); R2 = Coefficient of determination/phenotypic variance explained (PVE). In natural aging condition, control was not used, and we used treatment trait value for QTL analysis