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Table 4 QTLs identified for three seed-germination related traits (GR, SL & FW) in LM6 and ZM6 RIL populations under artificial aging treatment

From: Whole-genome mapping identified novel “QTL hotspots regions” for seed storability in soybean (Glycine max L.)

Aging treatment Traits QTL Chromosome (Linkage group) Position(cM) Marker LOD value Additive effect R2 value(%)
Artificial-LM6 rGR qrGR-3-1 3 (N) 1.01 bin228-bin229 3.37 0.06 8.94
qrGR-3-2 3 (N) 81.01 bin322-bin323 3.43 −0.05 8.14
qrGR-17–1 17 (D2) 113.31 bin1924-bin1925 7.05 0.09 19.11
qrGR-17-2 17 (D2) 123.01 bin1930-bin1931 8.65 0.09 22.64
rSL qrSL-5-1 5 (A1) 55.51 bin505-bin506 4.09 0.01 11.78
qrSL-6-1 6 (C2) 62.11 bin613-bin614 4.06 −0.01 11.75
qrSL-9-1 9 (K) 77.51 bin1057-bin1058 4.12 0.02 11.92
rFW qrFW-3-1 3 (N) 3.31 bin231-bin232 3.50 0.04 8.51
qrFW-17–1 17 (D2) 116.51 bin1925-bin1926 6.41 0.07 19.05
qrFW-17-2 17 (D2) 123.01 bin1930-bin1931 8.33 0.07 23.16
Artificial-ZM6 rGR qrGR-10-1 10 (O) 91.21 bin1313-bin1314 3.73 0.05 8.69
qrGR-17-3 17 (D2) 130.21 bin2176-bin2177 4.26 −0.05 10.56
qrGR-18–1 18 (G) 47.91 bin2226-bin2227 6.61 0.07 16.03
rSL qrSL-17–1 17 (D2) 128.21 bin2176-bin2177 3.09 −0.03 7.38
qrSL-18–1 18 (G) 35.21 bin2218-bin2219 3.05 0.03 7.38
qrSL-18-2 18 (G) 50.01 bin2228-bin2229 3.01 0.03 7.30
rFW qrFW-11-1 11 (B1) 3.51 bin1356-bin1357 3.25 −0.04 8.50
qrFW-17-3 17 (D2) 129.21 bin2176-bin2177 4.26 −0.04 11.44
  1. rGR (relative germination rate), rSL (relative seedling length) and rFW (relative fresh weight); R2 = Coefficient of determination/phenotypic variance explained (PVE). In artificial aging condition control was available, and we used relative trait value for QTL analysis