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Table 2 A list of lincRNAs differentially expressed after the functional loss of Math5, Isl1 or Pou4f2

From: Systematic identification of intergenic long-noncoding RNAs in mouse retinas using full-length isoform sequencing

Transcript Host gene Expression Variation (log2Foldchange) Nearby protein-coding gene
Pou4f2-null Isl1-null Math5-null
PB.9897.1 −3.6 −3.6 1600014C23Rik
PB.1163.1 RP24-231D14.1 / Gm5532 1.6 Acbd6
PB.21043.1 − 1.8 − 2.8 Adprhl1
PB.15635.1 RP23-301 M3.1 −1.0 Ak4
PB.19692.1 − 1.1 Akt2
PB.15291.1 3.6 Aldh1b1
PB.1920.1 1.5 1.4 Atg5
PB.13742.1 RP23-3D20.2 −2.2 −4.8 −1.2 Car2
PB.235.1 − 1.2 Ccdc115
PB.3841.6 RP24-402O2.2 1.5 Ccdc182
PB.12472.1 2.6 2.7 Cdca7
PB.19030.1 RP23-305C1.1 1.1 1.0 Cntn4
PB.12202.1 1.8 Cntrl
PB.16460.1 1.3 1.3 Cyp51
PB.16304.1 2.3 Disp3
PB.2627.1 RP24-570 M12.3 −3.8 −3.8 Dyrk2
PB.7138.1 RP24-67I21.3 2.1 2.1 Entpd4
PB.13067.1 RP23-401 J24.3 −1.4 Erv3
PB.23709.1 − 1.5 Etd
PB.11813.1 E330013P04Rik 1.2 2.4 Fam204a
PB.5217.1 1.1 Foxn3
PB.12325.1 −1.0 Galnt13
PB.12831.1 RP23-230H3.7 −2.6 −2.6 Gjd2
PB.12831.2 RP23-230H3.2 3.0 Gjd2
PB.24411.4 1.6 Gm21860
PB.421.1 RP24-146 K19.1 −2.9 −1.5 Hsfy2
PB.11544.1 RP23-167 K23.1 2.1 Htr7
PB.5127.1 −2.1 Irf2bpl
PB.16019.1 −3.3 −3.3 Matn1
PB.14015.1 RP23-403H2.2 2.6 2.7 Mgarp
PB.12783.1 RP23-300H23.1 −1.2 Mpped2
PB.13695.1 RP24-558H21.4 −1.2 Mrps28
PB.18509.1 RP24-83C9.4 1.1 Nfe2l3
PB.22226.1 4.0 Nrp1
PB.17616.4 AC121564.2 1.1 Orai1
PB.7358.1 RP23-67A17.1 −3.8 Pou4f1
PB.7356.2 RP23-67A17.1 −3.0 − 3.6 Pou4f1
PB.7360.1 RP23-67A17.1 −2.2 −2.2 Pou4f1
PB.21631.1 −1.5 Pou4f2
PB.10720.8 − 2.3 −5.6 Pou4f3
PB.10720.6 −3.4 −5.4 Pou4f3
PB.9822.74 −1.0 Prrc2a
PB.4404.1 −1.0 −3.6 −2.0 Rab10
PB.12105.1 3.8 Rapgef1
PB.17233.2 −1.3 Rasgef1b
PB.14276.3 RP23-168E14.7 2.4 Rhbg
PB.14275.1 RP23-168E14.7 6.0 Rhbg
PB.14276.1 RP23-168E14.7 7.7 Rhbg
PB.5261.4 1.0 Rin3
PB.14453.1 AC131746.2 −3.9 −1.1 −1.6 Sec22b
PB.20752.2 RP23-145H5.1 −1.2 Sec23ip
PB.20752.3 RP23-145H5.1 −1.6 Sec23ip
PB.10765.1 −3.3 Sema6a
PB.10303.1 1.2 1.5 Six3
PB.13384.1 RP23-392P11.4 1.1 Slc32a1
PB.13385.1 RP23-392P11.4 2.6 Slc32a1
PB.18900.1 −1.2 Slc6a6
PB.11179.1 1.5 Ssh3
PB.20143.3 RP24-78 M9.4 1.3 Synm
PB.2545.1 1.2 Syt1
PB.20893.1 AC012382.2 4.2 Th
PB.20294.2 RP23-124O24.4 −1.2 Tmem126b
PB.580.1 −1.5 Tnp1
PB.2344.1 RP24-538A12.2 −1.8 −3.2
PB.11002.1 1.2 −2.8
PB.5665.1 RP23-235 J20.5 −2.8
PB.15109.1 − 1.2 − 2.6
PB.19035.1 − 2.5
PB.20042.1 Snhg14 −2.4
PB.23395.1 RP23-357C16.1 − 1.5
PB.10822.2 − 1.8 − 1.4
PB.7625.1 RP24-112I4.1 −1.6 −1.4
PB.14876.1 RP23-473G18.1 −1.8 − 1.1
PB.20300.1 RP24-267C3.1 −1.1
PB.6399.1 RP23-110 M15.1 − 1.0
PB.6163.26 RP23-88A13.2 1.1
PB.22575.1 RP23-442 M18.1 1.2
PB.1089.1 1.5
PB.23389.1 2.0
PB.313.1 RP23-176 M9.1 2.1
PB.13925.1 − 3.3 2.4
PB.8561.1 RP23-127A21.3 5.1 4.0
PB.17246.1 1.4
PB.2422.6 Rmst −1.0
PB.2474.1 RP24-447 J10.1 2.2
PB.4459.2 RP23-329 M17.1 −4.8 −4.8
PB.4689.1 1.5
PB.6169.1 − 1.5
PB.6894.35 RP23-268P13.4 − 1.5
PB.7962.1 3.6