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Table 2 lncDIFF group effect estimates and likelihood ratio test results of TCGA HNSC tumor vs. normal

From: lncDIFF: a novel quasi-likelihood method for differential expression analysis of non-coding RNA

Logarithmic link function
Genes Ensembl ID exp(βi1) (tumor) exp(βi2) (contrast) exp(βi1 + βi2) (normal) p-value FDR
ENSG00000005206.12 0.247 0.811 0.200 0.348 0.528
ENSG00000100181.17 0.737 0.993 0.732 0.974 0.982
ENSG00000126005.11 7.161 1.263 9.043 0.297 0.474
ENSG00000130600.11 181.885 1.571 285.661 0.044 0.115
ENSG00000131484.3 0.362 1.044 0.378 0.846 0.916
Identity link function
Genes Ensembl ID βi1 (tumor) βi2 (contrast) βi1 + βi2 (normal) p-value FDR
ENSG00000005206.12 0.247 −0.047 0.200 0.348 0.528
ENSG00000100181.17 0.737 −0.005 0.732 0.974 0.982
ENSG00000126005.11 7.160 1.887 9.047 0.297 0.474
ENSG00000130600.11 181.852 103.833 285.684 0.044 0.115
ENSG00000131484.3 0.362 0.016 0.378 0.846 0.916