Table 2 lncDIFF group effect estimates and likelihood ratio test results of TCGA HNSC tumor vs. normal
From: lncDIFF: a novel quasi-likelihood method for differential expression analysis of non-coding RNA
Logarithmic link function | |||||
Genes Ensembl ID | exp(βi1) (tumor) | exp(βi2) (contrast) | exp(βi1 + βi2) (normal) | p-value | FDR |
ENSG00000005206.12 | 0.247 | 0.811 | 0.200 | 0.348 | 0.528 |
ENSG00000100181.17 | 0.737 | 0.993 | 0.732 | 0.974 | 0.982 |
ENSG00000126005.11 | 7.161 | 1.263 | 9.043 | 0.297 | 0.474 |
ENSG00000130600.11 | 181.885 | 1.571 | 285.661 | 0.044 | 0.115 |
ENSG00000131484.3 | 0.362 | 1.044 | 0.378 | 0.846 | 0.916 |
Identity link function | |||||
Genes Ensembl ID | βi1 (tumor) | βi2 (contrast) | βi1 + βi2 (normal) | p-value | FDR |
ENSG00000005206.12 | 0.247 | −0.047 | 0.200 | 0.348 | 0.528 |
ENSG00000100181.17 | 0.737 | −0.005 | 0.732 | 0.974 | 0.982 |
ENSG00000126005.11 | 7.160 | 1.887 | 9.047 | 0.297 | 0.474 |
ENSG00000130600.11 | 181.852 | 103.833 | 285.684 | 0.044 | 0.115 |
ENSG00000131484.3 | 0.362 | 0.016 | 0.378 | 0.846 | 0.916 |