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Table 5 Validated loci associated with cattle fertility

From: Validation of 46 loci associated with female fertility traits in cattle

BTAa Region (Mb)b Previous Studiesc Previous Phenotype(s)d Previous Breedse Current Study Phenotype(s)f
1 61–62 1 [37] AISC HolsteinN HCR1 & TBRD
1 68–69 1 [37] AISH HolsteinN HCR1 & TBRD
1 147–148 1 [37] AISC HolsteinN HCR1 & TBRD
2 53–54 1 [37] AISC HolsteinN HCR1 & TBRD
2 123–124 1 [37] AISH HolsteinN HCR1 & TBRD
2 136–137 1 [33] CI HolsteinIt HCR1 & TBRD
3 90–91 1 [37] AISC HolsteinN HCR1 & TBRD
4 29–30 1 [37] AISC HolsteinN TBRD
4 37–38 1 [40] Reproduction BrangusU, BrahmanA, Tropical CompositeA HCR1 & TBRD
5 64–65 1 [40] Reproduction BrangusU, BrahmanA, Tropical CompositeA TBRD
5 88–89 1 [36] ICF HolsteinCa HCR1 & TBRD
5 107–108 2 [19, 37] CI [19]; IFLC & ICF [37] HolsteinA,I,N, JerseyA HCR1 & TBRD
5 112–113 1 [37] AISC HolsteinN TBRD
5 116–117 1 [33, 37] NRRC [33]; AISC [37] HolsteinIt,N HCR1
5 118–119 1 [37] AISC HolsteinN TBRD
6 23–24 1 [38] DO & SC HolsteinU HCR1 & TBRD
6 92–93 2 [19, 37] CI [19]; FTI & ICF [37] HolsteinA,I,N, JerseyA HCR1 & TBRD
7 43–44 1 [37] AISC HolsteinN TBRD
8 20–21 1 [37] AISC, AISH HolsteinN HCR1 & TBRD
8 91–92 1 [33] CI HolsteinIt TBRD
11 8–9 1 [37] AISC HolsteinN TBRD
13 45–46 1 [37] AISC HolsteinN TBRD
14 1–2 3 [19, 37] CI [19]; AISC, FTI, IFLC, & NRRC [37]; HCR & CCR HolsteinA,I,N,U, JerseyA TBRD
14 82–83 2 [33, 37] AISH [37]; NRRC [33] HolsteinIt,N HCR1
16 21–22 1 [34] P28 Angus crossbreedU HCR1 & TBRD
16 36–37 1 [40] Reproduction BrangusU, BrahmanA, Tropical CompositeA HCR1 & TBRD
17 3–4 2 [19, 37] CI [19]; AISH & IFLC [37] HolsteinA,I,N, JerseyA HCR1 & TBRD
17 14–15 1 [37] AISC HolsteinN TBRD
17 72–73 2 [19, 37] CI [19]; NRRC [37] HolsteinA,I,N, JerseyA HCR1 & TBRD
18 61–62 2 [19] CI [19]; DPR HolsteinA,I,N, JerseyA HCR1 & TBRD
18 62–63 3 [19, 35, 37] CI [19]; FTI & IFLC [37]; P42 [35] HolsteinA,I,N, JerseyA HCR1 & TBRD
18 62–63 3 [19, 35, 37] CI [19]; FTI & IFLC [37]; P42 [35] HolsteinA,I,N, JerseyA HCR1 & TBRD
18 47–48 1 [33] DFS HolsteinIt TBRD
20 27–28 1 [37] AISC HolsteinN TBRD
21 54–55 2 [19, 37] CI [19]; NRRC [37] HolsteinA,I,N, JerseyA HCR1
22 49–50 2 [19, 37] CI [19]; ICF [37] HolsteinA,I,N, JerseyA TBRD
22 49–50 2 [19, 37] CI [19]; ICF [37] HolsteinA,I,N, JerseyA TBRD
23 50–51 1 [38] CR1 HolsteinCa,N TBRD
24 60–61 1 [37] AISC HolsteinN TBRD
26 27–28 1 [37] AISC HolsteinN HCR1 & TBRD
26 34–35 2 [19, 37] CI [19]; AISC, NRRC, & NRRH [37] HolsteinA,I,N, JerseyA HCR1
26 35–36 1 [37] AISC HolsteinN HCR1
28 8–9 1 [37] AISC HolsteinN HCR1 & TBRD
29 14–15 1 [37] AISH HolsteinN TBRD
29 16–17 1 [37] AISH HolsteinN TBRD
29 50–51 1 [37] AISC HolsteinN TBRD
  1. a Bos taurus chromosome (BTA) location of the locus
  2. b Region associated locus is located in (in Mb) as measured by numbered nucleotides in reference to the UMD 3.1 genome assembly (http://bovinegenome.org/?q=node/61; accessed 15 September 2016)
  3. c Number of previous studies locus previous associated in is listed. The citation number for each study is listed in superscript brackets
  4. d Traits previously associated with loci abbreviated as follows: AISC number of inseminations to conception in cows, AISC number of inseminations to conception in heifers, CI calving interval, CCR cow conception rate, CR1 conception rate to first insemination in cows, DFS days to first service, DO days open, DPR daughter pregnancy rate, FTI fertility index, HCR heifer conception rate, ICF interval (in days) from calving to first insemination, IFLC days from first to last insemination in cows, NRRC 56 day non return rate in cows, NRRH 56 day non return rate in heifers, P28 pregnancy success at day 28 post embryo transfer, P42 pregnancy success within first 42 days of mating, SC services per conception. If multiple traits are listed from different studies the citation number for study is listed in superscript brackets
  5. e Cattle breeds loci were previously identified are listed with the country or region the population was from indicated in superscript as follows: Australian - A; Canadian - Ca; Chinese - C, Irish - I; Italian - It; Nordic - N; United States - U
  6. f Phenotype of the current study the loci was associated with: conception rate at first AI service - HCR1; number of breedings to conception - TBRD