Skip to main content

Advertisement

Table 3 trans-NATs correlated with target mRNA polysome association. For each trans-NAT / target pair, the fold change in RNA steady-state level and associated adjusted p value are indicated in columns tNAT_FC and tNAT_pval for trans-NATs, and trgt_FC and trgt_pval for target genes. The fold change in target mRNA polysome association and its associated adjusted p value are reported in columns trgt_FC_PA and trgt_pval_PA. The experimental conditions compared are indicated in the column “Comparison” where “ctrl” refers to untreated control

From: Prediction of regulatory long intergenic non-coding RNAs acting in trans through base-pairing interactions

trans-NAT Target tNAT_FC tNAT_pval trgt_FC trgt_pval trgt_FC_PA trgt_pval_PA Comparison Correlation
XLOC_002456 AT5G24670 2.06 0.022 0.76 0.031 1.53 0.021 Root ctrl_Shoot ctrl Positive
XLOC_002963 AT3G27470 2.98 0.0014 1.63 1.0E-6 1.41 0.053 Root ctrl_Shoot ctrl Positive
XLOC_002528 AT3G10770 4.91 9.6E-9 0.86 0.33 1.3 0.086 Low Pi _High Pi Positive
AT4G16355 AT2G22260 0.3 0.0013 1 0.98 0.73 0.067 Root ABA_Root ctrl Positive