Table 12 Eighteen detected protein complexes detected by SE-DMTG

Yeast Krogan core

YDL007W, YDL097C, YDL147W, YDR363W-A, YDR394W, YDR427W,

YER021W, YFR004W, YFR052W, YGL048C, YHR027C, YHR200W, YIL075C,

YKL145W, YLR421C, YOR117W, YOR259C, YOR261C, YPR108W,YFR010W

YBL041W, YER012W, YER094C, YFR050C, YGL011C, YGR135W, YGR253C,

YJL001W, YML092C, YMR314W, YOL038W, YOR157C, YOR362C, YPR103W, YBR173C

YCR020W-B, YCR052W, YDR303C, YFR037C, YGR275W, YIL126W, YKR008W,

YLR033W, YLR321C, YLR357W, YML127W, YMR033W, YMR091C, YPR034W

Yeast DIP

YDL007W, YDL097C, YDL147W, YDR394W, YDR427W, YEL037C, YHR200W,

YKL145W, YER012W, YER021W, YFR004W, YFR052W, YGL004C, YGL048C,

YLR421C, YOR117W, YOR259C, YOR261C, YPR108W, YBR272C, YFR010W

YBL093C, YBR193C, YBR253W, YDL005C, YER022W, YGR104C, YHR041C,

YHR058C, YLR071C, YMR112C, YNL236W, YOL051W, YOL135C, YOR140W

YAL043C, YDR195W, YDR301W, YGR156W, YJR093C, YKL059C,

YKR002W, YLR115W, YLR277C, YNL222W, YNL317W, YPR107C, YMR061W

Yeast combined6

YBL026W, YBR055C, YBR152W, YDL087C, YDR378C, YDR473C,

YER029C, YER112W, YER172C, YFL017W-A, YGR074W, YGR091W,

YHR165C, YJL203W, YKL173W, YLR147C, YLR275W, YML049C,

YMR240C, YMR288W, YNL147W, YNL286W, YOR159C, YOR308C,

YPL213W, YPR178W, YPR182W, YDL030W, YOR148C

YBL093C, YBR193C, YBR253W, YCR081W, YDL005C, YDR308C,

YDR443C, YER022W, YGL025C, YGL127C, YGL151W, YGR104C,

YHR041C, YHR058C, YLR071C, YNL236W, YNR010W, YOL051W,

YOL135C, YOR174W, YPR070W, YPR168W

YBR154C, YDR156W, YJL148W, YJR063W, YNL113W, YNL248C,

YOR210W, YOR340C, YOR341W, YPR010C, YPR110C, YPR187W

Human DIP

CCNC, CDK8, MED1, MED10, MED12, MED14, MED16, MED17,

MED24, MED26, GATA1

EIF3A, EIF3C, EIF3D, EIF3E, EIF3H, EIF3J, EIF3K, EIF3L, EIF3M, EIF3F

ERCC2, ERCC3, GTF2H1, GTF2H2, GTF2H3, GTF2H4, GTF2H5

Human HPRD+BioGRID

RPL10A, RPL10L, RPL11, RPL12, RPL13, RPL14, RPL15, RPL17, RPL18,

RPL18A, RPL19, RPL21, RPL22, RPL23, RPL23A, RPL24, RPL3,

RPL30, RPL31, RPL32, RPL37A, RPL4, RPL5, RPL6, RPL7, RPL7A,

RPL8, RPL9, RPLP0, RPS10, RPS11, RPS12, RPS13, RPS14, RPS15A,

RPS16, RPS18, RPS19, RPS2, RPS20, RPS21, RPS23, RPS24, RPS25, RPS26,

RPS27, RPS27A, RPS27L, RPS28, RPS29, RPS3, RPS3A, RPS4X, RPS5,

RPS6, RPS7, RPS8, RPS9, RPSA, TSR1, PYM1

PSMA1, PSMA2, PSMA3, PSMA4, PSMA5, PSMA6, PSMA7, PSMA8,

PSMB1, PSMB2, PSMB3, PSMB4, PSMB5, PSMB6, PSMB7, PSMB8, PSMC1,

PSMC2, PSMC3, PSMC4, PSMC5, PSMC6, PSMD1, PSMD11, PSMD12, PSMD13,

PSMD14, PSMD2, PSMD3, PSMD4, PSMD6, PSMD7, PSMD8, PSME1, PSME2,

RAD23B, UBQLN1, SEM1

MRPL10, MRPL11, MRPL12, MRPL13, MRPL14, MRPL15, MRPL16, MRPL19,

MRPL2, MRPL23, MRPL24, MRPL3, MRPL32, MRPL37, MRPL38, MRPL39,

MRPL4, MRPL40, MRPL41, MRPL42, MRPL44, MRPL45, MRPL50, MRPL51, MRPL52,

MRPL55, MRPL58, MRPL9, MRPS18A, A4, MRPS9

Mouse BioGRID

Baiap2, Camk2a, Camk2b, Cnksr2, Dlg1, Dlg2, Dlg4, Dlgap1, Dnm1, Fxr1, Grin1,

Grin2a, Grin2b, Homer1, Iqsec1, Kalrn, Prkcg, Shank1, Shank2,

Shank3, Sptbn1, Syngap1, Mdk, Cyfip2, Nckap1, Pde4dip, Tnik, Cyfip1, Agap2

Bmi1, Cbx2, Cbx7, Pcgf2, Phc1, Phc2, Ring1, Rnf2, Aurkb, Rybp

Epop Ezh2 Jarid2, Mtf2 Rbbp4 Suz12,Ezh1