Data set | Algorithm | Number | CYC2008 | SGD | ||||
---|---|---|---|---|---|---|---|---|
 |  |  | JaccardI | JaccardS | Jaccard | JaccardI | JaccardS | Jaccard |
Krogan-Core | MCODE | 78 | 0.4492 3rd | 0.2163 | 0.292 | 0.4001 1 st | 0.2192 | 0.2832 |
 | MCL | 374 | 0.2507 | 0.342 | 0.2893 | 0.2195 | 0.3236 | 0.2616 |
 | CFinder | 1396 3rd | 0.2913 | 0.3437 | 0.3154 | 0.2311 | 0.3263 | 0.2705 |
 | DPClus | 497 | 0.2816 | 0.4142 3rd | 0.3352 | 0.2443 | 0.3897 3rd | 0.3003 |
 | IPCA | 579 | 0.4744 2nd | 0.4016 | 0.435 2nd | 0.3403 | 0.3671 | 0.3532 2nd |
 | CMC | 2136 1 st | 0.1065 | 0.1403 | 0.1211 | 0.091 | 0.1346 | 0.1086 |
 | COACH | 348 | 0.4206 | 0.3971 | 0.4085 | 0.325 | 0.3575 | 0.3405 |
 | HC-PIN | 167 | 0.3543 | 0.2891 | 0.3184 | 0.3152 | 0.292 | 0.3032 |
 | SPICi | 227 | 0.3453 | 0.3383 | 0.3417 | 0.2991 | 0.3165 | 0.3075 |
 | ClusterONE | 243 | 0.426 | 0.3568 | 0.3884 3rd | 0.3556 3rd | 0.3244 | 0.3393 3rd |
 | WPNCA | 374 | 0.3889 | 0.3646 | 0.3764 | 0.2673 | 0.3239 | 0.2929 |
 | CALM | 1411 2nd | 0.2728 | 0.4495 1 st | 0.3395 | 0.2377 | 0.4299 1 st | 0.3061 |
 | ClusterEPs | 540 | 0.3185 | 0.3034 | 0.3108 | 0.2927 | 0.3034 | 0.2980 |
 | SE-DMTG | 371 | 0.5124 1 st | 0.432 2nd | 0.4688 1 st | 0.3973 2nd | 0.4044 2nd | 0.4008 1 st |
DIP | MCODE | 53 | 0.188 | 0.1099 | 0.1387 | 0.184 | 0.1098 | 0.1375 |
 | MCL | 609 | 0.142 | 0.33 | 0.1986 | 0.1241 | 0.3031 | 0.1761 |
 | CFinder | 2147 2nd | 0.1654 | 0.346 | 0.2238 | 0.1544 | 0.3437 | 0.2131 |
 | DPClus | 909 | 0.1786 | 0.3991 | 0.2468 | 0.1602 | 0.3695 | 0.2235 |
 | IPCA | 1242 3rd | 0.2283 | 0.4062 3rd | 0.2923 | 0.1986 | 0.3938 | 0.2641 |
 | CMC | 1192 | 0.2086 | 0.4344 2nd | 0.2818 | 0.1894 | 0.4081 3rd | 0.2587 |
 | COACH | 329 | 0.2986 3rd | 0.3878 | 0.3374 | 0.2509 | 0.3659 | 0.2977 |
 | HC-PIN | 21 | 0.0097 | 0.0075 | 0.0085 | 0.0142 | 0.0077 | 0.01 |
 | SPICi | 402 | 0.2213 | 0.3303 | 0.265 | 0.1944 | 0.3175 | 0.2412 |
 | ClusterONE | 341 | 0.2752 | 0.2909 | 0.2828 | 0.2556 3rd | 0.2918 | 0.2725 |
 | WPNCA | 654 | 0.2889 | 0.4059 | 0.3376 3rd | 0.2458 | 0.3922 | 0.3022 3rd |
 | CALM | 2447 1 st | 0.1031 | 0.3773 | 0.1619 | 0.0931 | 0.3519 | 0.1473 |
 | ClusterEPs | 728 | 0.2992 2nd | 0.3941 | 0.3402 2nd | 0.2963 1 st | 0.4107 2nd | 0.3442 2nd |
 | SE-DMTG | 758 | 0.3266 1 st | 0.4717 1 st | 0.386 1 st | 0.2842 2nd | 0.4504 1 st | 0.3485 1 st |
combined6 | MCODE | 63 | 0.2309 | 0.1661 | 0.1932 | 0.2089 | 0.1625 | 0.1828 |
 | MCL | 508 | 0.2182 | 0.3799 | 0.2772 | 0.1854 | 0.3456 | 0.2414 |
 | CFinder | 5140 1 st | 0.1829 | 0.4858 | 0.2658 | 0.1621 | 0.4506 3rd | 0.2384 |
 | DPClus | 658 | 0.2548 | 0.4742 | 0.3315 | 0.2227 | 0.4261 | 0.2925 |
 | IPCA | 2160 2nd | 0.3850 2nd | 0.5025 3rd | 0.4360 2nd | 0.3136 2nd | 0.4556 2nd | 0.3715 2nd |
 | CMC | 892 | 0.2573 | 0.5006 | 0.3399 | 0.2188 | 0.4442 | 0.2932 |
 | COACH | 682 | 0.2872 | 0.5082 2nd | 0.3670 3rd | 0.221 | 0.4458 | 0.2955 |
 | HC-PIN | 176 | 0.2606 | 0.2481 | 0.2542 | 0.2225 | 0.2139 | 0.2181 |
 | SPICi | 348 | 0.3033 3rd | 0.4307 | 0.3560 | 0.2614 3rd | 0.382 | 0.3104 3rd |
 | ClusterONE | 648 | 0.2292 | 0.4387 | 0.3011 | 0.1944 | 0.3971 | 0.261 |
 | WPNCA | 898 | 0.2252 | 0.4339 | 0.2965 | 0.181 | 0.3943 | 0.2482 |
 | CALM | 2064 3rd | 0.2229 | 0.476 | 0.3036 | 0.1894 | 0.4255 | 0.2621 |
 | ClusterEPs | 907 | 0.2542 | 0.3206 | 0.2836 | 0.2533 | 0.3381 | 0.2896 |
 | SE-DMTG | 490 | 0.4679 1 st | 0.5208 1 st | 0.493 1 st | 0.3520 1 st | 0.471 1 st | 0.4029 1 st |