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Table 3 DEGs with homologs in Arabidopsis according to KEGG pathway analysis

From: Transcriptome analysis reveals differences in the mechanisms of fiber initiation and elongation between long- and short-fiber cotton (Gossypium hirsutum L.) lines

G. hirsutum gene ID Arabidopsis ID ArabDesc Gene name Log2(LFG/SFG)
0 5 F10
profile 0
Metabolism
 Gh_A13G0351 AT3G19270 cytochrome P450, family 707, subfamily A, polypeptide 4 AT3G19270 −2.30 0.22 -a
 Gh_D13G0395 AT3G19270 cytochrome P450, family 707, subfamily A, polypeptide 4 AT3G19270 −2.14 −0.34 − 0.17
 Gh_D08G1683 AT1G32200 phospholipid/glycerol acyltransferase family protein ATS1 −1.13 −0.31 − 1.08
 Gh_A03G1487 AT2G43090 aconitase/3-isopropylmalate dehydratase protein SSU1 −1.11 −2.40 −0.32
 Gh_A01G1270 AT2G01290 ribose-5-phosphate isomerase 2 RPI2 1.03 1.37 −0.06
Gh_D08G0936b AT2G18700 trehalose phosphatase/synthase 11 TPS11 1.03 2.58 −1.43
 Gh_D01G2232 AT5G01530 light harvesting complex photosystem II LHCB4.1 1.22 1.72 1.14
 Gh_D01G0156 AT2G20340 pyridoxal phosphate (PLP)-dependent transferases superfamily protein AT2G20340 1.25 0.92 0.58
 Gh_D01G0629 AT5G36110 cytochrome P450, family 716, subfamily A, polypeptide 1 AT5G36110 1.32 1.50
 Gh_D05G1605 AT5G54770 thiazole biosynthetic enzyme, chloroplast (ARA6) (THI1) (THI4) THI4 1.36 0.89 −0.21
 Gh_D05G2361 AT4G10340 light-harvesting complex of photosystem II 5 LHCB5 1.49 0.69 3.58
Genetic Information Processing
 Gh_A07G1168 AT4G02070 MUTS homolog 6 MSH6 −1.06 −0.30 −0.57
 Gh_D10G0234 AT2G33770 phosphate 2 UBC24 1.14 1.48 0.45
 Gh_A13G0294 AT2G21660 cold, circadian rhythm, and RNA binding 2 CCR2 1.18 0.72 −1.08
 Gh_D06G1571 AT2G04030 chaperone protein htpG family protein HSP88.1 2.23 2.63 2.12
Environmental Information Processing
 Gh_D03G0317 AT5G10570 basic helix-loop-helix (bHLH) DNA-binding superfamily protein AT5G10570 −1.31 −0.63 −0.70
 Gh_A06G1440 AT3G08510 phospholipase C 2 AT3G08510 1.02 1.79 1.58
Gh_D11G0426 AT4G17500 ethylene responsive element binding factor 1 ERF-1 1.75 3.54 0.00
Cellular Processes
Gh_A07G1077 AT5G12250 beta-6 tubulin TUB6 1.01 1.31 0.62
Organismal Systems
 Gh_Sca013634G01 AT5G24470 pseudoresponse regulator 5 PRR5 1.24 1.16 −0.84
 Gh_D05G3492 AT5G54470 B-box type zinc finger family protein BBX29 1.47 1.55 1.00
Diseases
 Gh_D08G2277 AT5G28770 bZIP transcription factor family protein AT5G28770 1.08 0.83 0.71
profile 7
Metabolism
 Gh_A12G0583 AT3G11480 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein BSMT1 2.32 1.46 −3.38
Gh_A02G1663 AT5G42180 POD superfamily protein PER64 −1.22 −1.01 −3.13
 Gh_A08G2395 AT2G45550 cytochrome P450, family 76, subfamily C, polypeptide 4 CYP76C4 −3.64 −5.57 −2.02
 Gh_A11G0380 AT1G74920 aldehyde dehydrogenase 10A8 ALDH10A8 −0.44 −0.26 −1.98
Gh_A05G3328 AT4G33440 PL-like superfamily protein AT4G33440 −0.29 −0.91 −1.59
 Gh_D07G0692 AT5G15490 UDP-glucose 6-dehydrogenase family protein UGD3 0.51 −1.34 −1.54
 Gh_D07G2503 AT3G01910 sulfite oxidase SOX −0.27 0.24 −1.06
Gh_A11G0965 AT1G02310 glycosyl hydrolase superfamily protein AT1G02310 −1.29 0.51 −1.04
 Gh_A06G1309 AT4G22010 SKU5 similar 4 SKS4 −0.08 0.53 1.02
Gh_D11G0237 AT4G23820 PL-like superfamily protein AT4G23820 0.29 −0.07 1.13
 Gh_A13G1123 AT3G26330 cytochrome P450, family 71, subfamily B, polypeptide 37 CYP71B37 −0.34 −0.17 1.20
Gh_A05G3108 AT5G40390 raffinose synthase family protein RS5 0.46 0.21 1.35
Gh_D12G2437 AT3G48950 PL-like superfamily protein AT3G48950 1.22 0.63 1.36
Gh_D11G1910 AT2G23620 methyl esterase 1 MES1 −0.05 0.25 1.52
 Gh_A12G0098 AT4G35420 dihydroflavonol 4-reductase-like 1 DRL1 −0.81 1.07 1.68
 Gh_A05G0525 AT5G24910 cytochrome P450, family 714, subfamily A, polypeptide 1 CYP714A1 −0.40 1.87 1.71
 Gh_D10G1008 AT4G39490 cytochrome P450, family 96, subfamily A, polypeptide 10 CYP96A10 0.06 −0.43 1.74
 Gh_D05G0646 AT5G24910 cytochrome P450, family 714, subfamily A, polypeptide 1 CYP714A1 −0.70 0.54 1.80
 Gh_A07G1593 AT1G65820 microsomal glutathione s-transferase, putative AT1G65820 −0.81 − 0.13 1.86
 Gh_D05G1149 AT1G80660 H(+)-ATPase 9 AT1G80660 −0.54 1.08 2.86
 Gh_A09G1848 AT5G07990 cytochrome P450 superfamily protein CYP75B1 3.90
 Gh_A09G2349 AT1G05160 cytochrome P450, family 88, subfamily A, polypeptide 3 CYP88A3 1.58 3.70 4.12
Genetic Information Processing
 Gh_D09G1479 AT5G02500 heat shock cognate protein 70–1 HSP70–1 0.28 0.11 1.51
 Gh_A05G2014 AT3G24590 plastidic type I signal peptidase 1 AT3G24590 −0.09 1.31 1.79
 Gh_D05G2258 AT3G24590 plastidic type I signal peptidase 1 AT3G24590 1.32 0.42 2.62
Environmental Information Processing
 Gh_A12G1090 AT4G01820 P-glycoprotein 3 AT4G01820 −1.42 −0.23 1.51
 Gh_D12G1213 AT4G01820 P-glycoprotein 3 AT4G01820 −0.81 0.51 2.26
Cellular Processes
Gh_D01G0939 AT1G75780 tubulin beta-1 chain TUB1 −0.01 −0.04 1.20
Gh_D02G2420 AT1G50010 tubulin alpha-2 chain TUA2 0.72 0.75 1.39
Organismal Systems
 Gh_D07G2384 AT4G29810 MAP kinase kinase 2 MKK2 1.00 −2.61 −3.56
 Gh_A09G2314 AT1G06040 B-box zinc finger family protein BBX24 1.00 −0.49 1.02
  1. a-, not detected at that developmental stage. bBold lines mean that the gene was selected for expression analysis