Fig. 3

Scatter plot showing the proportion shared with female and male depth-of-coverage for each contig. This is the Illumina human male dataset with the hg38 female reference. Each point shows a single contig, with colors indicating the region of origin. Stacked histograms (log-scaled) on the top and right-hand side show the distribution of the female proportion and male depth of coverage values, respectively. The shaded regions of the histograms correspond to Y-contigs. Most of the PAR contigs have male depth of coverage about 120 and are hence not visible on this plot. The decision boundary output in best mode is shown as a dashed black line, with contigs to the left of the line classified as Y