BMC Genomics

Table 2 Number of differentially expressed genes (DEGs) identified from all pairwise comparisons

From: Validation and delineation of a locus conferring Fusarium crown rot resistance on 1HL in barley by analysing transcriptomes from multiple pairs of near isogenic lines

NIL pair	Comparison^a	Number of DEGs
NIL pair	Comparison^a	Up-regulated	Down-regulated
1H_NIL1	R^M_vs_R^I	226	60
1H_NIL1	S^M_vs_S^I	831	113
1H_NIL2	R^M_vs_R^I	962	132
1H_NIL2	S^M_vs_S^I	806	78
1H_NIL3	R^M_vs_R^I	910	117
1H_NIL3	S^M_vs_S^I	1585	252
1H_NIL1	R^I_vs_S^I	48	236
1H_NIL1	R^M_vs_S^M	225	123
1H_NIL2	R^I_vs_S^I	51	459
1H_NIL2	R^M_vs_S^M	178	89
1H_NIL3	R^I_vs_S^I	249	132
1H_NIL3	R^M_vs_S^M	80	71

^a ‘M’ stands for ‘mock-inoculation’, ‘I’ for Fp-inoculation, ‘R’ for resistant isolines and ‘S’ for susceptible isolines

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ISSN: 1471-2164

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