Table 1 Raw sequence input and alignment rate for each sample
Sample (S) | Input Reads | Aligned Reads | Alignment Rate |
|---|---|---|---|
SAL-HYP_S1 | 17,513,472 | 14,624,051 | 83.50% |
SAL-HYP_S2 | 24,094,107 | 19,964,614 | 82.90% |
SAL-HYP_S3 | 27,047,835 | 22,287,716 | 82.40% |
SAL-HYP_S4 | 24,981,223 | 21,071,895 | 84.40% |
LPS-HYP_S5 | 23,162,071 | 19,331,652 | 83.50% |
LPS-HYP_S6 | 25,034,582 | 20,957,262 | 83.70% |
LPS-HYP_S7 | 20,983,465 | 17,650,778 | 84.10% |
LPS-HYP_S8 | 19,537,801 | 16,267,282 | 83.30% |
SAL-SPL_S9 | 21,331,374 | 17,454,947 | 81.80% |
SAL-SPL_S10 | 21,437,236 | 17,395,505 | 81.10% |
SAL-SPL_S11 | 21,433,531 | 17,879,727 | 83.40% |
SAL-SPL_S12 | 19,190,383 | 15,290,676 | 79.70% |
LPS-SPL_S13 | 24,568,387 | 20,350,638 | 82.80% |
LPS-SPL_S14 | 21,547,234 | 17,603,507 | 81.70% |
LPS-SPL_S15 | 24,649,999 | 20,264,221 | 82.20% |
LPS-SPL_S16 | 19,107,077 | 13,344,122 | 69.80% |
SAL-RBC-1_S1 | 57,139,999 | 45,112,439 | 79.00% |
SAL-RBC-2_S2 | 47,612,233 | 37,992,062 | 79.80% |
SAL-RBC-3_S3 | 51,482,969 | 39,720,094 | 77.20% |
SAL-RBC-4_S4 | 48,209,077 | 37,319,383 | 77.40% |
LPS-RBC-1_S5 | 51,672,988 | 41,299,540 | 79.90% |
LPS-RBC-2_S6 | 40,124,952 | 32,113,483 | 80.00% |
LPS-RBC-3_S7 | 63,647,656 | 50,109,212 | 78.70% |
LPS-RBC-4_S8 | 53,561,519 | 42,115,678 | 78.60% |