Table 3 List of transcription factors with top degrees in the core network of each module
Module | Gene ID | Gene name | Degree | Best hit in A.thaliana | Description for the best hit |
|---|---|---|---|---|---|
Green | 110,723,560 | B3 | 586 | AT5G42700.1 | B3 family protein |
110,715,387 | TALE | 355 | AT4G32980.1 | homeobox gene 1 | |
110,705,456 | TALE | 283 | AT4G32980.1 | homeobox gene 1 | |
110,717,078 | GRAS | 245 | AT3G49950.1 | GRAS family protein | |
110,682,413 | GRAS | 184 | AT3G49950.1 | GRAS family protein | |
110,708,326 | LSH4 | 179 | AT3G23290.2 | LIGHT-DEPENDENT SHORT HYPOCOTYLS-like protein | |
110,710,092 | WRKY | 76 | AT5G43290.1 | WRKY DNA-binding protein 49 | |
110,682,067 | WRKY | 36 | AT4G39410.1 | WRKY DNA-binding protein 13 | |
110,714,201 | bHLH | 33 | AT4G37850.1 | bHLH family protein | |
110,692,073 | WOX | 29 | AT3G18010.1 | WUSCHEL related homeobox 1 | |
110,703,894 | bHLH | 27 | AT3G26744.1 | bHLH family protein | |
110,686,357 | HSF | 27 | AT1G46264.1 | heat shock transcription factor B4 | |
110,695,891 | EIL | 25 | AT5G65100.1 | EIL family protein | |
110,700,571 | TCP | 22 | AT3G47620.1 | TEOSINTE BRANCHED, cycloidea and PCF (TCP) 14 | |
Pink | 110,698,679 | LFY | 57 | AT5G61850.1 | floral meristem identity control protein LEAFY (LFY) |
110,729,369 | Trihelix | 55 | AT5G03680.1 | Trihelix family protein | |
110,729,692 | HD-ZIP | 47 | AT4G00730.1 | HD-ZIP family protein | |
110,719,982 | RAV | 46 | AT1G13260.1 | related to ABI3/VP1 1 | |
110,691,257 | G2-like | 44 | AT1G25550.1 | G2-like family protein | |
110,736,045 | M-type_MADS | 33 | AT5G48670.1 | AGAMOUS-like 80 | |
novel.9281 | B3 | 29 | AT4G33280.1 | B3 family protein | |
110,708,638 | MYB_related | 28 | AT3G21430.2 | DNA binding | |
110,685,646 | YABBY | 25 | AT1G69180.1 | YABBY family protein | |
novel.22515 | MIKC_MADS | 16 | AT5G20240.1 | MIKC_MADS family protein | |
110,711,979 | Dof | 14 | AT2G28510.1 | Dof family protein | |
Blue | novel.11405 | MYB_related | 316 | AT4G09450.1 | MYB_related family protein |
110,707,171 | MIKC_MADS | 282 | AT5G13790.1 | AGAMOUS-like 15 | |
110,688,475 | C2H2 | 258 | AT5G59820.1 | C2H2 family protein | |
110,684,112 | C2H2 | 237 | AT5G59820.1 | C2H2 family protein | |
110,685,095 | M-type_MADS | 214 | AT5G60440.1 | AGAMOUS-like 62 | |
novel.23507 | MYB_related | 176 | AT5G04760.1 | MYB family protein | |
110,735,861 | M-type_MADS | 119 | AT5G60440.1 | AGAMOUS-like 62 | |
110,740,130 | M-type_MADS | 75 | AT2G24840.1 | AGAMOUS-like 61 | |
110,696,735 | LBD | 36 | AT3G49940.1 | LOB domain-containing protein 38 | |
110,736,081 | M-type_MADS | 34 | AT5G60440.1 | AGAMOUS-like 62 | |
110,737,201 | C2H2 | 25 | AT5G56200.1 | C2H2 family protein | |
110,697,372 | bZIP | 19 | AT3G62420.1 | basic region/leucine zipper motif 53 | |
110,726,622 | NAC | 15 | AT3G04070.1 | NAC domain containing protein 47 | |
110,726,634 | NAC | 15 | AT3G04070.1 | NAC domain containing protein 47 | |
110,719,209 | RAV | 14 | AT1G50680.1 | RAV family protein | |
Black | novel.4708 | M-type_MADS | 223 | AT5G55690.1 | M-type_MADS family protein |
novel.40662 | Nin-like | 181 | AT2G43500.1 | Nin-like family protein | |
110,711,872 | Trihelix | 180 | AT2G33550.1 | Trihelix family protein | |
110,687,197 | MYB_related | 128 | AT5G04760.1 | MYB family protein | |
novel.34399 | C3H | 106 | AT3G19360.1 | C3H family protein | |
110,698,972 | C3H | 93 | AT3G19360.1 | C3H family protein | |
110,736,053 | C3H | 58 | AT1G03790.1 | C3H family protein | |
novel.34398 | C3H | 50 | AT3G19360.1 | C3H family protein | |
110,725,731 | MIKC_MADS | 10 | AT5G20240.1 | MIKC_MADS family protein | |
Turquoise | 110,697,084 | TFL | 85 | AT5G03840.1 | TERMINAL FLOWER 1 |
110,729,689 | TFL | 44 | AT5G03840.1 | TERMINAL FLOWER 1 | |
110,722,691 | FAR1 | 18 | AT1G10240.1 | FAR1-related sequence 11 | |
110,722,837 | HD-ZIP | 18 | AT5G47370.1 | Homeobox-leucine zipper protein 4 (HB-4) / HD-ZIP protein | |
110,694,654 | TCP | 18 | AT3G27010.1 | TCP family protein | |
110,733,648 | ERF | 17 | AT5G25190.1 | ERF family protein | |
110,711,921 | ERF | 16 | AT5G13330.1 | related to AP2 6 l | |
110,722,774 | HD-ZIP | 15 | AT3G61890.1 | homeobox 12 | |
110,731,701 | HD-ZIP | 14 | AT2G46680.1 | homeobox 7 | |
110,722,241 | MIKC_MADS | 14 | AT5G60910.1 | AGAMOUS-like 8 |