A | body | p-val | 5′ reg | p-val | 3′ reg | p-val |
 DMRs
| 522 |
<1e-4
| 147 |
0.027
| 145 |
0.042
|
  > 1 gene | 15 | 0.15 | 20 | 0.46 | 19 | 0.61 |
 genes
| 484 |
<1e-4
| 166 |
0.057
| 162 | 0.11 |
  > 1 DMR | 42 |
0.042
| 2 | 0.47 | 5 |
0.053
|
  coding | 469 |
<1e-4
| 150 | 0.12 | 156 |
0.053
|
  lncRNA | 15 | 0.43 | 16 |
0.055
| 6 |
0.94
|
B | TE | <null p-val | CNE | >null p-val | Â | Â |
 DMRs
| 111 |
<1e-4
| 44 |
<1e-4
| Â | Â |
 DMRs (> 1 hit)
| 29 |
0.006
| 3 | 0.29 | Â | Â |
 hits
| 146 |
<1e-4
| 48 |
0.001
| Â | Â |
  +gene body | 65 |
<1e-4
| 28 |
<1e-4
| Â | Â |
  + 5′ region | 34 | 0.46 | 6 |
0.0093
| Â | Â |
  + 3′ region | 33 | 0.34 | 3 | 0.28 |  |  |
- A: Numbers of DMRs in gene bodies and regulatory regions with p-values (columns). Rows are the numbers of: DMRs overlapping at least one (1) or more (2) genes, genes with at least one (3) or more (4) DMRs, protein-coding genes (5), and long-non-coding RNAs (6). P-values are defined as the fraction of nullDMR sets with as many or more overlaps as the real DMRs and p-values < 0.1 are bolded (see Methods). The 3′ regulatory region-lncRNA p-value is italicized because this number was actually lower than expected since only ~ 6% of the nullDMR sets had fewer hits in 3′ regulatory regions of lncRNAs
- B: Numbers of DMRs containing transposable elements (TEs) and conserved non-coding elements (CNEs) with p-values (columns). Rows are the numbers of: DMRs overlapping at least one (1) or more (2) TE/CNE, TE/CNEs in a DMR (3), TE/CNEs in a DMR that also overlapped a gene body (4) or regulatory region (5,6). P-values reflect the fraction of nullDMR sets with fewer (TEs) or more (CNEs) hits than the actual DMRs
