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Table 4 Sample sizes and summary genetic diversity statistics for samples of Saccostrea echinata from 10 localities based on 27,896 putatively neutral and 31 candidate adaptive SNPs

From: Mitochondrial and nuclear genetic analyses of the tropical black-lip rock oyster (Saccostrea echinata) reveals population subdivision and informs sustainable aquaculture development

   PRL MLK ANR WGU MRN NHL BKD UMB BWN NUM
N SNP   37 24 19 37 30 30 16 28 15 26
Source   Wild Wild Wild Wild Wild Wild Wild Wild Farm
(wild origin)
Wild
N E [95% C.I.] Neutral 6164.2
[4536.1–9613.2]
25,655.2
[7621.2–∞]

[∞–∞]
2751.7 [2335.-53,243.4] 212.8
[209.–5216.3]
2466.4
[2099.7–2987.7]

[∞–∞]
3566.9
[2560.8–5869.9]

[∞–∞]
2521.5
[2068.6–3227.0]
H E Neutral 0.107 0.105 0.109 0.105 0.107 0.105 0.101 0.097 0.088 0.102
  Adaptive 0.273 0.218 0.268 0.265 0.306 0.316 0.325 0.281 0.103 0.128
H 0 Neutral 0.070 0.070 0.076 0.068 0.071 0.071 0.070 0.064 0.060 0.070
  Adaptive 0.185 0.174 0.175 0.175 0.181 0.222 0.184 0.230 0.054 0.095
F IS Neutral 0.341 0.336 0.307 0.349 0.335 0.322 0.308 0.335 0.316 0.312
  Adaptive 0.321 0.205 0.348 0.342 0.407 0.298 0.435 0.182 0.479 0.258
A Neutral 45,285 41,821 42,084 45,861 44,313 42,674 32,023 33,115 27,585 38,633
  Adaptive 54 48 51 55 59 50 42 43 28 37
A R Neutral 1.422 1.382 1.430 1.444 1.426 1.388 1.112 1.083 0.972 1.299
  Adaptive 1.642 1.484 1.612 1.689 1.851 1.558 1.315 1.315 0.892 1.130
  1. NSNP, sample size; NE [95% C.I.], effective population size [95% confidence interval]; HE, expected heterozygosity; HO, observed heterozygosity; FIS, inbreeding coefficient (fixation index); A, number of alleles; AR, allelic richness. PRL, Pirlangimpi; MLK, Milikapiti; ANR, Anuru Bay; WGU, Wigu; MRN, Mooroongga Island; NHL, Nhulunbuy; BKD, Bukudal; UMB, Umbakumba; BWN, Bowen; NUM, Noumea