Skip to main content

Table 4 Sample sizes and summary genetic diversity statistics for samples of Saccostrea echinata from 10 localities based on 27,896 putatively neutral and 31 candidate adaptive SNPs

From: Mitochondrial and nuclear genetic analyses of the tropical black-lip rock oyster (Saccostrea echinata) reveals population subdivision and informs sustainable aquaculture development

  

PRL

MLK

ANR

WGU

MRN

NHL

BKD

UMB

BWN

NUM

N SNP

 

37

24

19

37

30

30

16

28

15

26

Source

 

Wild

Wild

Wild

Wild

Wild

Wild

Wild

Wild

Farm

(wild origin)

Wild

N E [95% C.I.]

Neutral

6164.2

[4536.1–9613.2]

25,655.2

[7621.2–∞]

∞

[∞–∞]

2751.7 [2335.-53,243.4]

212.8

[209.–5216.3]

2466.4

[2099.7–2987.7]

∞

[∞–∞]

3566.9

[2560.8–5869.9]

∞

[∞–∞]

2521.5

[2068.6–3227.0]

H E

Neutral

0.107

0.105

0.109

0.105

0.107

0.105

0.101

0.097

0.088

0.102

 

Adaptive

0.273

0.218

0.268

0.265

0.306

0.316

0.325

0.281

0.103

0.128

H 0

Neutral

0.070

0.070

0.076

0.068

0.071

0.071

0.070

0.064

0.060

0.070

 

Adaptive

0.185

0.174

0.175

0.175

0.181

0.222

0.184

0.230

0.054

0.095

F IS

Neutral

0.341

0.336

0.307

0.349

0.335

0.322

0.308

0.335

0.316

0.312

 

Adaptive

0.321

0.205

0.348

0.342

0.407

0.298

0.435

0.182

0.479

0.258

A

Neutral

45,285

41,821

42,084

45,861

44,313

42,674

32,023

33,115

27,585

38,633

 

Adaptive

54

48

51

55

59

50

42

43

28

37

A R

Neutral

1.422

1.382

1.430

1.444

1.426

1.388

1.112

1.083

0.972

1.299

 

Adaptive

1.642

1.484

1.612

1.689

1.851

1.558

1.315

1.315

0.892

1.130

  1. NSNP, sample size; NE [95% C.I.], effective population size [95% confidence interval]; HE, expected heterozygosity; HO, observed heterozygosity; FIS, inbreeding coefficient (fixation index); A, number of alleles; AR, allelic richness. PRL, Pirlangimpi; MLK, Milikapiti; ANR, Anuru Bay; WGU, Wigu; MRN, Mooroongga Island; NHL, Nhulunbuy; BKD, Bukudal; UMB, Umbakumba; BWN, Bowen; NUM, Noumea