Table 2 Salmonella and Escherichia strains in this study. The nomenclature (genus, species, serovar and strain), accession and number of TFTR sequences are listed for all strains of Salmonella and Escherichia in this study
Genus | Species/ species and serovar | Strain | NCBI Tax ID | Number of IPR001647 hits |
|---|---|---|---|---|
Salmonella | enterica serovar Typhimurium | DT104 | 85,569 | 13 |
Salmonella | enterica serovar Typhimurium | STm2 | 1,218,144 | 13 |
Salmonella | enterica serovar Typhimurium | 4_74 | 909,946 | 13 |
Salmonella | enterica serovar Typhimurium | 14,028 s | 588,858 | 13 |
Salmonella | enterica serovar Typhimurium | SL1344 | 216,597 | 13 |
Salmonella | enterica serovar Enteritidis | 2009 K0958 | 1,192,586 | 12 |
Salmonella | enterica serovar Dublin | UC16 | 1,192,688 | 12 |
Salmonella | enterica serovar Paratyphi | RKS4594 | 476,213 | 12 |
Salmonella | enterica serovar Arizonae | CVMN6509 | 1,395,108 | 12 |
Salmonella | enterica serovar Choleraesuis | SC-B67 | 321,314 | 14 |
Salmonella | bongori | ATCC 43975 | 54,736 | 13 |
Salmonella | enterica serovar Muenchen | BAA1594 | 1,079,477 | 13 |
Salmonella | enterica serovar Infantis | CVM N32599PS | 1,439,843 | 13 |
Salmonella | enterica serovar Newport | SL254 | 423,368 | 13 |
Salmonella | enterica serovar Paratyphi | ATCC 9150 | 295,319 | 13 |
Escherichia | coli | 55,989 | 585,055 | 14 |
Escherichia | coli | ATCC 9637 | 566,546 | 13 |
Escherichia | coli | BL21-DE3 | 469,008 | 15 |
Escherichia | coli | MS 21–1 | 749,527 | 15 |
Escherichia | coli | SE11 | 409,438 | 15 |
Escherichia | coli | SMS-3-5 | 439,855 | 16 |
Escherichia | coli | 3162–1 | 1,281,200 | 15 |
Escherichia | coli | UTI89 | 364,106 | 12 |
Escherichia | coli | 1–110-08_S3_C1 | 1,444,132 | 14 |
Escherichia | coli | MG1655 K-12 | 511,145 | 13 |
Escherichia | albertii | TW07627 | 502,347 | 10 |
Escherichia | albertii | B156 | 550,693 | 11 |
Escherichia | albertii | KF1 | 1,440,052 | 10 |
Escherichia | fergusonii | ATCC35469 | 585,054 | 10 |
Escherichia | fergusonii | ECD227 | 981,367 | 9 |