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Table 2 Genes found in overlapping homozygous segments found within long ROH in over 85% of the SWB horses

From: Signatures of selection in the genome of Swedish warmblood horses selected for sport performance

Exact overlap in a ROHa Gene symbol Gene name % of SWB
4:44,468,835:44,656,577 THSD7A Thrombospondin type 1 domain containing 7A 86.0%
4:50,825,457:50,825,457 HDAC9 Histone deacetylase 9 86.6%
6:41,324,520:41,661,196 GRIN2B Glutamate ionotropic receptor NMDA type subunit 2B 88.0%
7:42,688,962:42,905,689 B3GAT1 Beta-1,3-glucuronyltransferase 1 85.0%
ENSECAG00000009503 Novel pseudogene 85.0%
ENSECAG00000003683 Novel gene - 85.0%
7:45,280,925:45,280,925 IER2 Immediate early response 2 91.0%
7:44,827,476:45,014,430 CACNA1A Calcium voltage-gated channel subunit alpha1 A 93.6%
7:45,525,088:45,525,088 DNASE2 Deoxy-ribonuclease 2, lysosomal 94.0%
7:47,244,532:47,445,238 ENSECAG00000010696 Novel gene 90.4%
ENSECAG00000012790 Novel gene 90.4%
ENSECAG00000004301 Novel gene 91.2%
7:48,419,051:48,419,051 ENSECAG00000020829 Novel gene 91.2%
7:49,160,767:49,212,921 SMARCA4 SWI/SNF related, actin dependent regulator of chromatin 86.0%
7:50,250,257:50,286,784 ENSECAG00000015373 Novel gene 85.8%
ZNF699 Zinc finger protein 699 89.0%
7:51,068,391:51,107,956 ENSECAG00000002451 Novel gene 91.4%
7:51,514,450:51,560,980 ENSECAG00000002839 Novel gene 91.2%
10:29,104,190:29,163,955 ENSECAG00000003641 Novel pseudogene 88.0%
ENSECAG00000025061 Novel pseudogene 88.0%
17:19,157,873:19,157,873 NEK5 NIMA related kinase 5 85.1%
  1. aHomozygous segments shared by over 85% of SWB horses within long ROH