Table 2 Genes found in overlapping homozygous segments found within long ROH in over 85% of the SWB horses
From: Signatures of selection in the genome of Swedish warmblood horses selected for sport performance
Exact overlap in a ROHa | Gene symbol | Gene name | % of SWB |
|---|---|---|---|
4:44,468,835:44,656,577 | THSD7A | Thrombospondin type 1 domain containing 7A | 86.0% |
4:50,825,457:50,825,457 | HDAC9 | Histone deacetylase 9 | 86.6% |
6:41,324,520:41,661,196 | GRIN2B | Glutamate ionotropic receptor NMDA type subunit 2B | 88.0% |
7:42,688,962:42,905,689 | B3GAT1 | Beta-1,3-glucuronyltransferase 1 | 85.0% |
ENSECAG00000009503 | Novel pseudogene | 85.0% | |
ENSECAG00000003683 | Novel gene - | 85.0% | |
7:45,280,925:45,280,925 | IER2 | Immediate early response 2 | 91.0% |
7:44,827,476:45,014,430 | CACNA1A | Calcium voltage-gated channel subunit alpha1 A | 93.6% |
7:45,525,088:45,525,088 | DNASE2 | Deoxy-ribonuclease 2, lysosomal | 94.0% |
7:47,244,532:47,445,238 | ENSECAG00000010696 | Novel gene | 90.4% |
ENSECAG00000012790 | Novel gene | 90.4% | |
ENSECAG00000004301 | Novel gene | 91.2% | |
7:48,419,051:48,419,051 | ENSECAG00000020829 | Novel gene | 91.2% |
7:49,160,767:49,212,921 | SMARCA4 | SWI/SNF related, actin dependent regulator of chromatin | 86.0% |
7:50,250,257:50,286,784 | ENSECAG00000015373 | Novel gene | 85.8% |
ZNF699 | Zinc finger protein 699 | 89.0% | |
7:51,068,391:51,107,956 | ENSECAG00000002451 | Novel gene | 91.4% |
7:51,514,450:51,560,980 | ENSECAG00000002839 | Novel gene | 91.2% |
10:29,104,190:29,163,955 | ENSECAG00000003641 | Novel pseudogene | 88.0% |
ENSECAG00000025061 | Novel pseudogene | 88.0% | |
17:19,157,873:19,157,873 | NEK5 | NIMA related kinase 5 | 85.1% |