Table 4 Procedures used to define short, medium and long ROH and the sliding windows’ parameters after QC
From: Signatures of selection in the genome of Swedish warmblood horses selected for sport performance
Type | Criteria to define ROH | Sliding window | ||||||
|---|---|---|---|---|---|---|---|---|
Num. SNPs | Density (SNP/kb) | Max gap (bp) | Length (kb) | Size (kb) | Het.a SNPs | Miss.b SNPs | ||
Short | 3 | 1/100 | 5000 | 50–125 | 5 | 0 | 0 | |
Medium | 10 | 1/100 | 5000 | 125–500 | 12 | 0 | 0 | |
Long | 30 | 1/100 | 5000 | > 500 | 50 | 1 | 1 | |