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Table 3 Distribution of 56 additional known domains besides the PHD finger domains in the different phylogenetic groups of Fig. 2. Values in parentheses indicate the percentages of given additional domain-containing proteins per total proteins of each phylogenetic group

From: Genome wide survey, evolution and expression analysis of PHD finger genes reveal their diverse roles during the development and abiotic stress responses in Brassica rapa L.

Additional domain Group A
(59 proteins)
Group B
(9 proteins)
Group C
(27 proteins)
Group D
(9 proteins)
Group E
(30 proteins)
Group F
(19 proteins)
AAA       1 (5.3)
Ald_Xan_dh_C2 1 (2.0)      
AMP-binding 1 (2.0)      
ARID    1 (3.7)    
AT hook      2 (6.7)  
BAH 4 (7.8)      
BRCT    1 (3.7)    
C1 8 (15.7)     3 (10.0)  
CHROMO   1 (11.1)     
Cohesin Heat    2 (7.4)    
Coiled-coil 2 (3.9) 1 (11.1) 4 (14.8)   3 (10.0) 2 (10.5)
DDT      6 (20.0)  
DEXDc    1 (3.7)    
DNMT1-RFD     1 (11.1)   
DUF1086   1 (11.1)     
DUF1087   1 (11.1) 1 (3.7)    
DUF295       1 (5.3)
DUF3594 15 (29.4)      
DYW_deaminase    1 (3.7)    
ELM2 1 (2.0)      
EloA-BP1    1 (3.7)    
FLU-1       1 (5.3)
FYRC    1 (3.7)    
FYRN    1 (3.7)    
GYF     4 (44.4)   
Helicase_C_4    1 (3.7)    
HELICc   1 (11.1)     
HOX       4 (21.1)
ING 2 (3.9)      
JAS   5 (55.6) 2 (7.4)    1 (5.3)
JmjC       1 (5.3)
KAT11      9 (30.0)  
MBD    1 (3.7)    
MBOAT_2     1 (11.1)   
Nipped-B_C    2 (7.4)    
Oberon-cc   1 (11.1)    2 (6.7)  
PLUS3     4 (44.4)   
Post-SET    4 (14.8)   1 (3.3)  
PPR    1 (3.7)    
PWWP    4 (14.8)    
Res III    1 (3.7)    
RING 4 (7.8)   2 (7.4)    1 (5.3)
SANT    1 (3.7)    
SAP    3 (11.1)    
SET    4 (14.8)   1 (3.3) 2 (10.5)
SRA    1 (3.7)    
SWIB     6 (66.7)   
Transmembrane 1 (2.0)    1 (11.1)   
WHIM1    2 (7.4) 1 (11.1) 2 (6.7)  
Znf-C2H2 1 (2.0)      
Znf-C5HC2       1 (5.3)
Znf-CCCH     1 (11.1)   
Znf-MIZ    3 (11.1)    
Znf-TAZ      9 (30.0)  
Znf-UBR    1 (3.7)    
Znf-ZZ      9 (30.0)