Identification of genomic regions regulating sex determination in Atlantic salmon using high density SNP data

Table 4 Summary of sex related genes from other species of Class Actynopterigii located in candidate regions in the Salmo salar genome

Chrom	N genes	Region	Start (bp)	End (bp)	Gene	Organism
2	20	10	4,378,828	4,378,974	RSPO1	Oryzias latipes
		10	4,384,694	4,384,886	ESR1	Danio rerio
		10¹	6,070,144	6,070,307	SOX8	Esox lucius
		11¹	11,563,571	11,564,290	SDY	Oncorhynchus mykiss
3	2	–
4	1	–
5	6	–
6	7	–
7	1	–
9	2	–
10	7	–
12	1	–
13	2	–
14	2	66¹	4,239,034	4,365,414	U2AF2A	Danio rerio
15	8	–
16	1	–
17	2	–
18	3	–
19	4	83	3,430,459	3,431,574	SOX9	Cynoglossus semilaevis
20	4	87	3,469,065	3,469,779	SDY	Oncorhynchus mykiss
21	10	90¹	453,741	454,610	LMO7	Salvelinus alpinus
		90¹	1,371,035	1,371,951	SOX21	Poecilia reticulata
		90¹	1,371,136	1,371,950	SOX21A	Danio rerio
		90¹	1,371,677	1,371,943	SOX1B	Danio rerio
		90	1,507,905	1,508,982	SOX1	Poecilia reticulata
22	2	–
23	7	98	9,548,635	9,549,406	GNRH-R	Oncorhynchus mykiss
24	3	–
25	3	–
26	1	–
27	3	–
28	7	–
29	1	–

Number (N) of sex related genes mapped in this study for each chromosome (Chrom). For those genes located within ¹ candidate regions predefined (< 0.5 Mb from the significant SNP) or in the vicinity of candidate regions (< 2.5 Mb from the significant SNP), the specific location of the gene in the S. salar genome and the organism where the gene was identified in NCBI are also detailed