2-DE-based proteomic analysis of protein changes associated with etiolated mesocotyl growth in Zea mays

Niu, Liangjie; Wu, Zhaokun; Liu, Hui; Wu, Xiaolin; Wang, Wei

doi:10.1186/s12864-019-6109-z

BMC Genomics

Table 2 Summary of the DAPs associated to mesocotyl growth in maize

From: 2-DE-based proteomic analysis of protein changes associated with etiolated mesocotyl growth in Zea mays

Spot	UniProtKB accession	Protein	Function or biological process involved
Type Ι DAPs
12	K7V2N6	USP family protein	Response to stress
62	P10979	Glycine-rich RNA-binding, ABA-inducible protein
73	B4F976	17.4 kDa class I HSP
74	C0PLI2	Cold shock protein 2
75	A0A1D6MRR5	Stress-inducible membrane pore protein
81	A0A1D6HEP0	Hsp70-Hsp90 organizing protein 3
82,83	B6SIX0	16.9 kDa class I HSP 1
85	A0A1D6MLV9	HSP 17.2
58	B4FPP1	Thioredoxin family Trp26	Cell redox homeostasis, defense response
59	B4G015	Thiamine thiazole synthase	Thiamine biosynthesis
60	Q19VG6	Major latex protein 22	abscisic acid-activated signaling pathway, defense response
65	K7V9P7	3-Oxoacyl-[acyl-carrier-protein] synthase I chloroplastic	Fatty acid biosynthesis
66	A0A1D6L9Y9	NAD-dependent epimerase/dehydratase	Colanic acid and lipopolysaccharide biosynthesis
67,89	A0A1D6LNJ7 B4G1B3	60S acidic ribosomal protein P3	Structural constituent of ribosome
68,76,77,84	A0A1D6MM79	Bowman-Birk type trypsin inhibitor	Serine-type endopeptidase inhibitor activity
69,71	A0A1D6IV87	Glycine-rich protein2	Mitochondrial mRNA modification
72	B6SIF0	Glycine-rich RNA-binding protein 2
70,78	A0A1D6MXZ7	Glycine-rich RNA-binding protein 3
79	B4FFZ9	Oil body-associated protein 1A	Storage protein
80,86	B6SGN7, A0A1D6JQ00	Embryonic protein DC-8	Storage protein
87	A2SZW8	1-Cys peroxiredoxin PER1	Cell redox homeostasis
Type II DAPs
2,3	A0A1D6GIG4 C0PKT5	Tubulin α chain	Structural constituent of cytoskeleton
39,40	A0A1D6FW13, A0A1D6EHT1	Actin-7	Structural constituent of cytoskeleton
4	A0A1D6EG37	Phosphoglycerate mutase	Carbohydrates metabolism
5,23	A0A1D6P248	Vacuolar proton pump2	ATP metabolic process
6	A0A1D6JZE5	Ran-binding protein 1	Intracellular transport, positive regulation of GTPase activity
7	A0A1D6EN35	Calreticulin-2	Protein folding
8	B4FMB1	DUF538 family protein	Uncharacterized
9	B7ZYX8	UDP-glucose 6-dehydrogenase	Glycosaminoglycan biosynthesis
10	K7 V763	Cytochrome c oxidase subunit 5b-2	Mitochondrial electron transport
11	B4G137	Ankyrin repeat domain-containing protein 2A	Protein targeting to chloroplast
24,36	Q29SB6	Pathogenesis-related protein 10	Response to stress
32	B4F9E3	Anther-specific proline-rich protein APG	Hydrolase activity, acting on ester bonds
34	A0A1D6G329	Survival protein SurE-like phosphatase/nucleotidase	Hydrolase activity
37	B4FN73	2-Oxoglutarate-dependent dioxygenase AOP1	Auxin catabolic process
41	A0A1D6QDC6	UMP-CMP kinase	Nucleotide biosynthesis
50	B4G039	UDP-arabinopyranose mutase 3	UDP-L-arabinose metabolic process, plant-type cell wall biogenesis
51	Q6JAH6	Glutathione peroxidase	Cell redox homeostasis
61	A0A1D6F5C2	Protein disulfide-isomerase	Cell redox homeostasis
Type III DAPs
1,15,33	A0A1D6E530, B6THU9	Peroxidase	Response to stress
14	C4J9R0	PLAT domain-containing protein 3
31	K7U5W7	Wound/stress protein
42	B6TM55	APx1-cytosolic ascorbate peroxidase
13,47	B4FQX1	α-1,4-glucan-protein synthase	UDP-L-arabinose metabolic process, plant-type cell wall biogenesis
16	A0A1D6I841	Ribulose-phosphate 3-epimerase	Carbohydrate metabolic process
49	A0A1R3MB28	Malate dehydrogenase
46	P49235	β-D-glucoside glucohydrolase
29,30	Q9FR39	Profilin-5
17	B4FRS8	Germin-like protein subfamily T member 1	Manganese ion binding, nutrient reservoir activity
18	A0A1D6N0U0	NADPH:quinone oxidoreductase	Oxidation-reduction process
19	B4FWD0	Minor allergen Alt a 7	Oxidation-reduction process
20	A0A1D6GCC8	Profilin	Regulation of actin cytoskeleton organization
21	A0A1D6JPD5	1,2-Dihydroxy-3-keto-5-methylthiopentene dioxygenase	Methionine metabolic process
22,28,88	B4FTH5, B4FHS5, B6T2W7	Xyloglucan endotransglucosylase/hydrolase	Cell wall biogenesis, xyloglucan metabolic process
25	B6TAJ3	Proteasome subunit α type	Proteasomal protein catabolic process
26	A0A1D6LDR6	Fructokinase-2	Carbohydrate metabolic process
27	A0A1D6N9H5	Metacaspase-6	Cysteine-type peptidase activity
35	A0A1D6GNR3	Ripening-related protein 3	Defense response to fungus
38	A0A1D6GCC4	Translation elongation factor family protein	Translation elongation factor activity
43	A0A1D6ECS1	Phosphoenolpyruvate carboxylase family protein	Carbon fixation in CAM and C4 organisms
44	B8A377	Cysteine synthase	Cysteine biosynthetic
45	B4FZU9	Dihydropyrimidine dehydrogenase (NADP(+))	Cellular response to nitrogen levels, thymine catabolic process, uracil catabolic process
48	Q84TL7	Legumin-like protein	nutrient reservoir activity
52	A0A1D6I5B2	Cysteine proteinase 2	Cysteine-type peptidase activity
53	B4FK84	Glutathione S-transferase 3	Glutathione metabolic process
54	B4FD74	Isoflavone reductase-like1	2′-hydroxyisoflavone reductase activity, defense response
56	B6UF45	Caffeoyl-CoA O-methyltransferase 1	Feruloylated polysaccharides synthesis
57	A0A1D6NVW3	Enolase 1	Glycolytic process
63	B4FIE9	S-adenosylmethionine synthase	S-adenosylmethionine biosynthetic process, one-carbon metabolic process

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ISSN: 1471-2164

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