Identification of differentially expressed genes and pathways between intramuscular and abdominal fat-derived preadipocyte differentiation of chickens in vitro

Table 1 Characteristics of the reads from eight chicken adipocyte libraries

Sample ID^a	Raw reads	Clean reads	Clean ratio^b	Mapping ratio^c	Q20 ratio (%)
AbAd1	75,595,006	72,548,947	95.97%	92.85%	95.87
AbAd2	126,110,450	120,496,454	95.55%	93.42%	96.01
AbPre1	114,650,344	109,068,167	95.13%	92.82%	95.75
AbPre2	119,804,518	115,123,603	96.09%	92.37%	96.04
IMAd1	100,975,170	96,608,787	95.68%	89.38%	96.10
IMAd2	107,859,100	103,169,969	95.65%	88.45%	95.88
IMPre1	120,678,792	113,687,015	94.21%	92.47%	95.64
IMPre2	96,725,572	92,307,799	95.43%	88.82%	96.24

^aAbAd and IMAd respectively represented ADF- and IMF-derived adipocyte groups; AbPre and IMPre respectively represented ADF- and IMF-derived preadipocyte groups. ^bClean ratio = (Clean reads/Raw reads)%; ^cMapping ratio = Mapped reads/All reads

ISSN: 1471-2164