Table 7 Gene sets interaction inferred from the network of BW0
From: A time-dependent genome-wide SNP-SNP interaction analysis of chicken body weight
SubNet | Gene set A | Gene set B |
|---|---|---|
1 | CUX1, PRKRIP1, ORAI3, RASA4, YWHAG, HSPB1, POR, RAD51D, RFFL, LIG3, CCLI5, CCL1, CCAH221, MRPS17, NIPSNAP2, PSPH, CCT6A, PHKG1, CHCHD2, VKORC1L1, GUSB, ASL2, ASL1, CRCP, KCTD7, NCBP3, CRK, YWHAE, MYO1C, INPP5K, SERPINF1, SMYD4, RPA1, DPH1, HIC1, POLDIP2, VTN, SLC46A1, ALDOC, TLCD1, FAM222B, ERAL1, FLOT2 | INIP, GNG10, SMC2, PTGR1, TXN, MuSK, LPAR1 |
1 | CUX1, PRKRIP1, ORAI3, RASA4, YWHAG, HSPB1, POR, RAD51D, RFFL, LIG3, CCLI5, CCL1, CCAH221, MRPS17, NIPSNAP2, PSPH, CCT6A, PHKG1, CHCHD2, VKORC1L1, GUSB, ASL2, ASL1, CRCP, KCTD7, NCBP3, CRK, YWHAE, MYO1C, INPP5K, SERPINF1, SMYD4, RPA1, DPH1, HIC1, POLDIP2, VTN, SLC46A1, ALDOC, TLCD1, FAM222B, ERAL1, FLOT2 | DTD1, SEC23B, DZANK1, BIRC5, POLR3F, KAT14, MGME1, SNX5, RRBP1, DSTN, CST3, CST7, APMAP, TTBK1, SLC22A7, TTL, VSX1, ENTPD6, MAL, MRPS5, SLC8A1 |
1 | CASTOR2, RCC1L, NCF1, RFC2, LAT2, EIF4H, UBE2G1, ATP2A3, P2RX1, MIS12, RABEP1 | INIP, GNG10, SMC2, PTGR1, TXN, MuSK, LPAR1 |
2 | GLDC, TYRP1, MPDZ, NFIB, ZDHHC21, CER1, PSIP1 | IGFBP1, IGFBP3, TNS3, SLC12A7 |
3 | MYOM2, CLN8, ERICH1, ACP1, TMEM18 | GPATCH2, ESRRG |
4 | GLDC, TYRP1, MPDZ, NFIB, ZDHHC21, CER1, PSIP1 | GLDC, TYRP1, MPDZ, NFIB, ZDHHC21, CER1, PSIP1 |
5 | INSIG1, EN2, SHH, LMBR1, MNX1, UBE3C, DNAJB6 | SLC30A5, CENPH, THBS4, MTX3 |
6 | S100Z, F2RL1, IQGAP2, POLK, HMGCR, NSA2, UTP15, ANKRA2, FOXD1 | ITGA1, PELO, FST |
6 | ITGA1, PELO, FST | NFIB, ZDHHC21, CER1, PSIP1 |
6 | MRPL45, CBX1, NFE2L1, CDK5RAP3, LOC107055293, PCGF2, RPL23, LASP1, RPL19, ERBB2, IKZF3, ZPBP2, GSDMA, PSMD3, CSF3, MED24, THRA, RARA, TOP2A, IGFBP4, CCR7, SMARCE1, KRT222, KRT20 | NFIB, ZDHHC21, CER1, PSIP1 |
6 | BTK, TIMM8A, TAF7L, CENPI, DKC1, MPP1, RHOGL, NONO, GJB1, NLGN3, IL2RG, SNX12, LOC422214, HTR2C, IL13RA2, PLS3 | NFIB, ZDHHC21, CER1, PSIP1 |
7 | S100Z, F2RL1, IQGAP2, POLK, HMGCR, NSA2 | SEC22A, ADCY5, HACD2, MYLK |
7 | METTL21A, CREB1, KLF7, ADAM23, EEF1B2, NDUFS1, NRP2 | S100Z, F2RL1, IQGAP2, POLK, HMGCR, NSA2 |
7 | S100Z, F2RL1, IQGAP2, POLK, HMGCR, NSA2 | NUDT7 |
8 | ACE, KCNH6, DCAF7, LIMD2, RNF113A, STRADA, DDX42, MYL4, CDC27, MAPT, ITGA3, DLX3, KAT7, SLC35B1, NGFR, MEOX1, PHB | POLK, HMGCR, NSA2, UTP15, ANKRA2, FOXD1 |
8 | TMEM30A, COX7A2, COL12A1, SLC17A5, EEF1A1, MTO1 | POLK, HMGCR, NSA2, UTP15, ANKRA2, FOXD1 |
9 | ARL1, CNOT4, WDR91, PDE6H, ARHGDIB, MGP, OC3, ART4, HIST1H2B7, HIST1H46L2, HISTH2A4L1, HIST2H4B, HIST1H46, HIST1H2B7, HIST1H110, HIST1H46L2, HIST1H2B8, HIST2H3L, H2AFJ, HIST1H103, HIST1H2A4, HIST1H101, HIST1H111L, HIST1H2A4L3, HIST1H2B5, HIST1H3H, HIST1H111R, DDX47, HEBP1, FAM234B, EMP1 | IFIH1, FAP, GCG, DPP4 |
9 | ARL1, CNOT4, WDR91, PDE6H, ARHGDIB, MGP, OC3, ART4, HIST1H2B7, HIST1H46L2, HISTH2A4L1, HIST2H4B, HIST1H46, HIST1H2B7, HIST1H110, HIST1H46L2, HIST1H2B8, HIST2H3L, H2AFJ, HIST1H103, HIST1H2A4, HIST1H101, HIST1H111L, HIST1H2A4L3, HIST1H2B5, HIST1H3H, HIST1H111R, DDX47, HEBP1, FAM234B, EMP1 | TECTB, ACSL5, VTI1A, TCF7L2, HABP2, DCLRE1A, NHLRC2 |