Skip to main content

Table 2 The most significant SNPs associated with SSC resistance identified in this study

From: Association mapping of a locus that confers southern stem canker resistance in soybean and SNP marker development

Marker ID

Chrom.

Pos (bp)

MAF

p.value

r 2

FDR Adjusted p-values

GBSRdm370

14

1,744,370

0.30

1.93E-31

0.70

6.35E-27

GBSRdm556

14

1,725,556

0.24

2.97E-28

0.64

4.88E-24

GBSRdm287

14

1,710,287

0.28

5.61E-28

0.63

5.66E-24

GBSRdm224

14

1,986,224

0.27

6.89E-28

0.63

5.66E-24

GBSRdm562

14

1,740,562

0.25

2.87E-27

0.62

1.89E-23

GBSRdm793

14

1,768,793

0.42

3.66E-25

0.59

2.00E-21

GBSRdm339

14

1,921,339

0.28

4.17E-22

0.54

1.71E-18

GBSRdm374

14

1,921,374

0.28

4.17E-22

0.54

1.71E-18

GBSRdm219

14

1,795,219

0.45

8.48E-21

0.52

3.09E-17

GBSRdm204

14

1,751,204

0.21

1.60E-19

0.50

5.27E-16

GBSRdm516

14

1,612,516

0.27

2.26E-17

0.47

6.75E-14

GBSRdm964

14

1,850,964

0.40

2.57E-17

0.47

7.02E-14

GBSRdm114

14

1,851,114

0.40

4.80E-17

0.46

1.21E-13

GBSRdm450

14

1,612,450

0.26

9.59E-16

0.45

2.25E-12

GBSRdm397

14

1,612,397

0.23

1.19E-14

0.43

2.60E-11

GBSRdm518

14

1,744,518

0.46

1.52E-14

0.43

3.13E-11

GBSRdm120

14

1,741,120

0.45

4.36E-14

0.42

8.43E-11

GBSRdm712

14

1,581,712

0.23

4.26E-13

0.41

7.77E-10

GBSRdm875

14

1,581,875

0.32

2.39E-12

0.40

4.13E-09

  1. Chrom. Chromosome, Pos (bp) physical position of the allelic variant, MAF Minor allele frequency, r2 R squared value of the model with the SNP. All SNPs were physically positioned in the Wm82.a2 version of the Glycine max genome
Back to article page

BMC Genomics

ISSN: 1471-2164

Contact us