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Table 5 Fifteen nonsynonymous mutations with similar patterns of GBSRdm370 detected in the haplotype analysis

From: Association mapping of a locus that confers southern stem canker resistance in soybean and SNP marker development

Pos

REF

ALT

Ncl

AA

Gene

Exon

1747,030

G

A

Gag/Aag

p.Glu8Lys/c.22G > A

Glyma.14G024400

1

1747,238

C

G

gCt/gGt

p.Ala77Gly/c.230C > G

Glyma.14G024400

1

1747,247

C

T

tCg/tTg

p.Ser80Leu/c.239C > T

Glyma.14G024400

1

1747,286

G

A

aGg/aAg

p.Arg93Lys/c.278G > A

Glyma.14G024400

1

1747,288

G

A

Gaa/Aaa

p.Glu94Lys/c.280G > A

Glyma.14G024400

1

1,783,495

A

G

Acc/Gcc

p.Thr417Ala/c.1249A > G

Glyma.14G024700

5

1,887,464

G

A

aGc/aAc

p.Ser4Asn/c.11G > A

Glyma.14G026300

1

1,908,059

G

A

Ggt/Agt

p.Gly285Ser/c.853G > A

Glyma.14G026500

3

1,908,548

T

G

tgT/tgG

p.Cys336Trp/c.1008 T > G

Glyma.14G026500

4

1,909,357

T

C

Atg/Gtg

p.Met274Val/c.820A > G

Glyma.14G026600

9

1,909,360

T

A

Atc/Ttc

p.Ile273Phe/c.817A > T

Glyma.14G026600

9

1,912,650

A

G

Tct/Cct

p.Ser44Pro/c.130 T > C

Glyma.14G026600

1

1,915,601

G

A

Gcc/Acc

p.Ala31Thr/c.91G > A

Glyma.14G026700

1

1,917,088

T

G

Tat/Gat

p.Tyr193Asp/c.577 T > G

Glyma.14G026700

5

1,942,282

C

T

cCt/cTt

p.Pro558Leu/c.1673C > T

Glyma.14G026900

3

  1. Pos position of the identified SNP in base pairs (bp), REF Allele corresponding to the reference genome (Williams 82), ALT Alternative allele observed at this position, Ncl Nucleotide modification observed due this SNP, AA Amino acid modification observed due this SNP, Exon The exon of the gene in which the SNP was identified