Data source name | Dataset name | Features detail | Web address |
---|---|---|---|
Literature | OBO AgeFactDB | The ageing-related information included both by manual and automatic information extraction from the scientific literature. | |
Functional annotation | David | The list of all functional annotation. | |
Biological pathways | Reactome Kegg | The list of biological pathway. | |
Gene Ontology | GO | The Biological Process, Molecular Function, and Cellular Component vocabularies. | |
Phenotype | HPO OMIM | The list of all ageing-related phenotype and associated gene. | |
Intrinsic properties | Pfam PDB | The chromosome number, location, gene segment, gene type, etc. | |
Sequence | RefSeq | The list of all known active site, binding site, chain, etc. | |
Protein-Protein Interaction | HPRD String | The list of each gene had a physical interaction with each of the positive genes. | |
Gene expression | GEO HAGR | The ageing-related expression included tissue type, overexpressed and under expressed, etc. | |
Regulatory | RegNetwork | The list of all regulatory relationship, such as miRNA, Transcription factor, etc. | |
Orthologues | CDD HomoloGene OrthoDB | The catalog of orthologous protein-coding genes across vertebrates and known conserved domain. | https://www.ncbi.nlm.nih.gov/Structure/cdd/cdd.shtml |