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Table 4 Differentially expressed genes candidates to be involved in female sexual development

From: De novo gonad transcriptome analysis of the common littoral shrimp Palaemon serratus: novel insights into sex-related genes

Gene Gene annotation Sequence ID Length (bp) ORF Fold change
(ovary/testis)
FDR p-value Mean TPM ovaries Mean TPM testes Gonad up-regulated
Vg Vitellogenin TRINITY_DN69557_c0_g1_i2 7827 complete 8.53 9.16E-6 635.87 106.46 yes
Vgr Vitellogenin receptor TRINITY_DN75859_c0_g1_i3 5765 complete 61.24 0.00 754.94 16.39 yes
Hpgds Hematopoietic prostaglandin D synthase TRINITY_DN66544_c0_g1_i1 2050 complete 4.98 6.96E-3 107.45 26.71 yes
Cathepsin D Cathepsin D TRINITY_DN74459_c2_g2_i1 2138 complete 16.92 9.31E-8 2637.5 224.02 yes
Pxt Chorion peroxidase-like TRINITY_DN71711_c0_g1_i1 2419 complete 4872.33 0.00 2495.51 0.67 yes
Fem-1b Protein fem-1 homolog B TRINITY_DN63971_c0_g1_i2 3646 complete 2.65 6.87E-3 37.10 19.73 no
Profilin Profilin TRINITY_DN61540_c0_g3_i2 904 complete 38.02 0.00 1768.14 68.09 yes
FAOMeT Farnesoic acid-O-methyl transferase TRINITY_DN64401_c1_g5_i1 1726 complete 7.84 3.52E-6 841.08 154.89 yes
Hsc70 Heat shock cognate 70 TRINITY_DN71006_c1_g1_i1 2040 3′ partial 3.64 4.79E-03 674.77 259.44 no
Dmc1 Disrupted meiotic cDNA TRINITY_DN62322_c4_g1_i1 1526 complete 5.30 9.59E-5 222.61 60.22 yes
Sox8 Transcription factor SOX-8 TRINITY_DN70088_c0_g1_i1 4022 complete 7.26 1.99E-3 3.57 0.58 no
Smad4 Mothers against decapentaplegic 4 TRINITY_DN62236_c4_g2_i4 3768 complete 24.67 0.00 97.11 4.91 yes
Gnrhr Gonadotropin-releasing hormone receptor TRINITY_DN64884_c0_g1_i3 2199 complete 2493.02 0.00 62.82 0.03 yes
Pges2 Prostaglandin E synthase 2 TRINITY_DN55480_c0_g1_i1 1590 complete 4.00 2.74E-4 51.2 18.82 no
Pgmrc1 Progestin membrane receptor component 1 TRINITY_DN74305_c2_g1_i3 1763 complete 3.17 9.65E-3 17.48 7.48 no