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Table 6 Inventory of sex-related genes not differentially expressed between sexes in this study

From: De novo gonad transcriptome analysis of the common littoral shrimp Palaemon serratus: novel insights into sex-related genes

Gene

Gene annotation

Sequence ID

Length (bp)

ORF

FDR p-value

Gonad up-regulated

β-catenin

Beta-catenin

TRINITY_DN68450_c3_g1_i1

4487

complete

0.28

no

Err

Estrogen-related receptor

TRINITY_DN62849_c1_g1_i1

3564

complete

0.02

no

Fem-1a

Feminization factor 1a

TRINITY_DN72410_c0_g1_i3

2424

complete

0.27

no

Fem-1c

Feminization factor 1c

TRINITY_DN67155_c0_g1_i1

4405

complete

0.05

no

Foxl2

Forkhead box L2

TRINITY_DN67281_c5_g1_i1

3329

complete

0.95

yes

Fst

Follistatin

TRINITY_DN65522_c1_g2_i4

3175

complete

0.22

no

Kifc1

Kinesin-like protein KIFC1

TRINITY_DN70471_c2_g1_i10

3013

complete

0.25

no

Msl3

Male-specific lethal 3

TRINITY_DN62887_c0_g2_i3

3270

complete

0.20

no

Ptgr1

Prostaglandin reductase 1

TRINITY_DN59739_c0_g1_i3

1538

complete

0.99

no

Sxl

Sex-lethal

TRINITY_DN60874_c2_g1_i16

1340

complete

0.46

no

Tra-2

Transformer 2

TRINITY_DN66599_c7_g4_i2

1920

3′ partial

0.31

no

Vasa

Vasa

TRINITY_DN61866_c4_g1_i1

2619

complete

0.73

yes

Dmrt11E*

Doublesex- and mab-3-related transcription factor 11E

TRINITY_DN65796_c0_g1_i1

2931

complete

  

Iag*

Insulin-like androgenic gland factor

TRINITY_DN53120_c0_g1_i3

433

internal

  

Wnt4*

Wingless-type MMTV integration site family, member 4

TRINITY_DN24615_c0_g1_i1

425

internal

  

Chh

Crustacean hyperglycemic hormone

TRINITY_DN70124_c2_g1_i2

844

complete

0.93

no

Mih*

Molt inhibiting hormone

TRINITY_DN72393_c0_g2_i1

755

complete

  

EcR

Ecdysone receptor

TRINITY_DN75882_c1_g1_i6

5148

complete

0.96

no

  1. Asterisk indicates genes with a TPM value < 1